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Report for CCDS34355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34355.1 Public Homo sapiens 6 SCAND3 24 110 108 CCDS HistoryNCBI Gene:114821Re-query CCDS DB by CCDS ID:34355.1Re-query CCDS DB by GeneID:114821See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34355.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452236.3 ENSP00000395259.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452236.3Link to Ensembl Protein Viewer:ENSP00000395259.2Re-query CCDS DB by Nucleotide ID:ENST00000452236Re-query CCDS DB by Protein ID:ENSP00000395259
Original member Current member NCBI NM_052923.2 NP_443155.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052923.2Link to Protein Sequence:NP_443155.1Re-query CCDS DB by Nucleotide ID:NM_052923Re-query CCDS DB by Protein ID:NP_443155Link to BLAST:NP_443155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443155.1 1325 Q6R2W3 1325 100% 0 0

Chromosomal Locations for CCDS 34355.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28571911 28573827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28574644 28576136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28579272 28579419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28586298 28586717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3978 nt):
ATGGAAGCAGTCTCTAGGGTCTTCCCAGCCTTGGCTGGCCAGGCTCCAGAAGAACAAGGGGAGATTATCA
AAGTAAAGGTTAAAGAAGAAGACCACACTTGGGATCAGGAATCAGCCCTACGTAGGAATTTGTCTTATAC
CAGGGAACTCTCTCGTCAGCGCTTCAGGCAGTTCTGCTATCAGGAGACACCTGGGCCCAGGGAGGCTCTG
AGTCAACTGCGGGAACTTTGCCGTCAGTGGCTGAACCCAGAGATACATACCAAGGAGCAGATCCTGGAAT
TGTTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTCCAGTCTTGGGTGCGGGAGCATAATCC
TGAGAGTGGAGAAGAGGTGGTGACTTTGCTGGAAGATTTGGAGAGGGAGCTTGATGAACCTAGACAGCAG
GTCTCACAGGGCACATATGGGCAGGAAGTTTCTATGGAAGAAATGATCCCTCTGGATTCTGCAAAGGAGT
CTTTAGGCACCCAGCTTCAGTCTATGGAAGATAGAATGGAATGTGAATCTCCAGAGCCACACCCACTTCA
AGATAATGGGTCATTTTTGTGGTTTTCCATGATGTCTCAAAGCATGGGTGGTGATAACCTCAGTAGCTTA
GATACTAATGAAGCAGAAATTGAACCAGAAAACATGAGAGAAAAGTTCTTCAGAAGCTTAGCAAGGTTAC
TGGAAAACAAAAGTAATAATACTAAGATATTTTCTAAAGCAAAGTACTGTCAGTTGATAAAGGAAGTGAA
AGAAGCTAAAGCTAAGGCGAAAAAGGAATCAGTTGACTACCGTCGCTTGGCTAGATTTGATGTTATCCTT
GTACAAGGAAATGAGAAGCTAATTGAGGCTGTAAATGGGGAAACAGATAAAATACGGTATTACTTACACA
GTGAGGACTTATTTGACATTCTGCATAATACACATCTCAGCATTGGACATGGTGGACGTACTCGCATGGA
GAAAGAGTTACAAGCGAAATACAAGAACATCACAAAAGAAGTTATAATGCTGTATCTGACCCTCTGTAAA
CCATGCCAACAGAAAAATTCAAAACTCAAGAAGGTTCTAACATCAAAATCAATTAAGGAAGTTAGTTCAA
GATGCCAAGTAGATCTTATAGACATGCAGTTGAATCCTGATGGGGAGTACAGATTTATTTTGCATTATCA
AGATCTCTGTACAAAGTTAACTTTTTTGCGGTCATTAAAGTCTAAAAGGCCTACGGAAGTTGCACATGCT
CTTTTAGATATATTTACAATTATTGGAGCACCCAGTGTCCTACAATCTGACAATGGGAGGGAATTTTCAA
GCCAGGTTGTCAGTGAACTCAGTAATATTTGGCCAGAATTGAAAATTGTCCATGGGAAGTCTCAGACCTG
CCAAAGCCAGAGTTCTGCAGAACAAACTGAGGATATCCGAAAGAGGATTTTCTCCTGGATGCAAACTAAC
AACTCATCACACTGGACTGAATTTTTGTGGTTCATTCAGATGTCCCAAAATCAGCCCTATCACAGAAGCA
TGCAACAGACTCCATGTGAAAGTGCATTTAGCTCTGAAGCTAAACTGGGCTTGTCCCATTCTCAGCTAAC
TGAAGAACTTGTTGCCAGCTTGCATACAGAAAATGAATTAGATCAGGCTGACAAAGAGTTAGAAAATACT
TTAAGAGCCCAGTATGAAGAAAACATTGAGACTGGAACAGACAGTAGTGATATTGAAGAGAATCTTTCTG
TCACTCCTAAGGTGGCTGAAAAAAGCCCTCCTGAGAGCAGACTAAGATTTTTATCCTGTGTAGTTTGTGA
AAAAGAATGCACAGGTGTTAATAGTTGTATATCATGTGATGGAAATATCCATGCAATTTGTGGAGTGCCC
TCTCAACATGGGACTGAGGGCTGTGGTCGGCAAATAACTTGTAGCCTTTGCTATGAAACCAGCACAATGA
AGAGGAAACATGATGAGATTCAAAGAAGTTTGCCTGTTAAACCTTCCAAAATGCTAAAGCCATCAGGGAC
ACCATTTTCACCAGACAAAGTAGGAGACTGGATGGCGAAACAAGCTTCACTGGACTTTTTTGTCAAGAAA
AGACATGCCTTTTCTGAACACAGTAGTAGTAATAAAAGAAATGTTAACAATAGAAGTTATCCTGAAGAAG
GGAAAACCAAAAGAGTTCATGCTAGTTTCACTCGGAAATATGATCCTTCATATATTGAGTTTGGTTTTGT
AGCTGTAATTGATGGTGAAGTACTAAAACCACAGTGTATTATTTGTGGAGATGTACTGGCTAATGAAGCA
ATGAAACCATCAAAACTTAAGCGACATTTATATTCAAAACATAAAGAAATAAGTTCACAACCAAAAGAAT
TCTTTGAAAGAAAGAGTAGTGAATTGAAAAGCCAACCAAAGCAGGTGTTCAACGTTTCTCATATAAACAT
TAGTGCTTTGCGGGCTTCATATAAAGTAGCACTTCCGGTTGCCAAGTCTAAAACACCATACACAATTGCT
GAGACACTAGTGAAAGACTGCATCAAAGAAGTTTGCTTGGAAATGTTGGGTGAATCTGCAGCAAAGAAGG
TAGCTCAGGTACCACTTTCCAATGACACCATAGCTCGACGTATTCAGGAACTGGCTAATGATATGGAAGA
TCAACTCATAGAACAAATAAAACTAGCAAAGTATTTTTCATTGCAACTTGATGAATGCAGAGATATTGCT
AACATGATAATTCTTTTAGTCTATGTGAGGTTTGAACATGATGATGATATAAAGGAAGAGTTCTTTTTTT
CAGCCTCTTTGCCTACAAACACAACTAGCTCAGAACTGTATGAAGCTGTAAAGAATTATATTGTTAACAA
ATGTGGTTTGGAATTTAAATTTTGTGTAGGAGTATGTTCTGATGGTGCAGCTTCAATGACAGGAAAACAT
TCTGAAGTGGTAACCCAGATTAAGGAACTTGCGCCAGAATGTAAAACAACACATTGCTTCATTCATCGAG
AAAGTCTTGCCATGAAAAAAATATCAGCTGAACTAAATAGTGTACTTAATGATATAGTAAAAATTGTGAA
TTATATAAAATCTAATTCATTGAATTCAAGATTATTCTCTTTATTATGTGATAATATGGAAGCTGATCAT
AAGCAACTGTTACTGCATGCTGAGATACGGTGGTTATCACGGGGAAAAGTTCTGTCAAGAATGTTTGAAA
TACGAAATGAACTCTTAGTGTTTCTGCAAGGCAAGAAACCCATGTGGTCCCAACTTTTTAAAGATGTGAA
TTGGACAGCCAGACTTGCTTATTTGTCTGATATCTTCAGTATTTTTAATGATCTTAATGCTTCTATGCAA
GGGAAGAATGCAACTTATTTTTCAATGGCAGATAAAGTTGAAGGACAAAAACAGAAGTTAGAAGCTTGGA
AAAACAGAATTTCTACAGATTGTTATGACATGTTTCATAATTTAACAACAATTATCAATGAAGTAGGTAA
TGATCTTGATATTGCACATCTGCGAAAAGTTATCAGTGAACATCTTACAAATTTGTTAGAATGTTTTGAA
TTTTATTTTCCATCAAAAGAAGATCCACGCATAGGAAATTTGTGGATCCAAAATCCATTTCTTTCATCAA
AAGATAACTTAAATTTAACTGTAACTCTACAGGATAAGTTGTTGAAGCTGGCTACCGACGAAGGATTGAA
AATCAGTTTTGAAAATACAGCATCACTTCCTTCATTTTGGATAAAAGCTAAAAATGACTATCCTGAGCTT
GCTGAGATTGCTTTAAAATTGCTGCTTCTTTTCCCCTCAACATACCTCTGTGAGACCGGATTCTCTACTT
TAAGTGTTATTAAAACAAAACATAGAAACAGTTTAAATATACATTATCCCCTGAGGGTAGCATTGTCATC
AATCCAACCTAGATTAGACAAATTAACAAGCAAGAAGCAAGCTCACTTATCACATTAA

Translation (1325 aa):
MEAVSRVFPALAGQAPEEQGEIIKVKVKEEDHTWDQESALRRNLSYTRELSRQRFRQFCYQETPGPREAL
SQLRELCRQWLNPEIHTKEQILELLVLEQFLTILPEELQSWVREHNPESGEEVVTLLEDLERELDEPRQQ
VSQGTYGQEVSMEEMIPLDSAKESLGTQLQSMEDRMECESPEPHPLQDNGSFLWFSMMSQSMGGDNLSSL
DTNEAEIEPENMREKFFRSLARLLENKSNNTKIFSKAKYCQLIKEVKEAKAKAKKESVDYRRLARFDVIL
VQGNEKLIEAVNGETDKIRYYLHSEDLFDILHNTHLSIGHGGRTRMEKELQAKYKNITKEVIMLYLTLCK
PCQQKNSKLKKVLTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHA
LLDIFTIIGAPSVLQSDNGREFSSQVVSELSNIWPELKIVHGKSQTCQSQSSAEQTEDIRKRIFSWMQTN
NSSHWTEFLWFIQMSQNQPYHRSMQQTPCESAFSSEAKLGLSHSQLTEELVASLHTENELDQADKELENT
LRAQYEENIETGTDSSDIEENLSVTPKVAEKSPPESRLRFLSCVVCEKECTGVNSCISCDGNIHAICGVP
SQHGTEGCGRQITCSLCYETSTMKRKHDEIQRSLPVKPSKMLKPSGTPFSPDKVGDWMAKQASLDFFVKK
RHAFSEHSSSNKRNVNNRSYPEEGKTKRVHASFTRKYDPSYIEFGFVAVIDGEVLKPQCIICGDVLANEA
MKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAKSKTPYTIA
ETLVKDCIKEVCLEMLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIA
NMIILLVYVRFEHDDDIKEEFFFSASLPTNTTSSELYEAVKNYIVNKCGLEFKFCVGVCSDGAASMTGKH
SEVVTQIKELAPECKTTHCFIHRESLAMKKISAELNSVLNDIVKIVNYIKSNSLNSRLFSLLCDNMEADH
KQLLLHAEIRWLSRGKVLSRMFEIRNELLVFLQGKKPMWSQLFKDVNWTARLAYLSDIFSIFNDLNASMQ
GKNATYFSMADKVEGQKQKLEAWKNRISTDCYDMFHNLTTIINEVGNDLDIAHLRKVISEHLTNLLECFE
FYFPSKEDPRIGNLWIQNPFLSSKDNLNLTVTLQDKLLKLATDEGLKISFENTASLPSFWIKAKNDYPEL
AEIALKLLLLFPSTYLCETGFSTLSVIKTKHRNSLNIHYPLRVALSSIQPRLDKLTSKKQAHLSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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