NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42759.1 Public Homo sapiens 2 LYPD1 24 110 108 CCDS HistoryNCBI Gene:116372Re-query CCDS DB by CCDS ID:42759.1Re-query CCDS DB by GeneID:116372See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42759.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397463.3 ENSP00000380605.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397463.3Link to Ensembl Protein Viewer:ENSP00000380605.2Re-query CCDS DB by Nucleotide ID:ENST00000397463Re-query CCDS DB by Protein ID:ENSP00000380605
Original member Current member NCBI NM_144586.7 NP_653187.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144586.7Link to Protein Sequence:NP_653187.3Re-query CCDS DB by Nucleotide ID:NM_144586Re-query CCDS DB by Protein ID:NP_653187Link to BLAST:NP_653187.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653187.3 141 Q8N2G4-1 141 100% 0 0

Chromosomal Locations for CCDS 42759.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132646045 132646280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132668400 132668537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132669881 132669932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGTGGGTCCTAGGCATCGCGGCAACTTTTTGCGGATTGTTCTTGCTTCCAGGCTTTGCGCTGCAAATCC
AGTGCTACCAGTGTGAAGAATTCCAGCTGAACAACGACTGCTCCTCCCCCGAGTTCATTGTGAATTGCAC
GGTGAACGTTCAAGACATGTGTCAGAAAGAAGTGATGGAGCAAAGTGCCGGGATCATGTACCGCAAGTCC
TGTGCATCATCAGCGGCCTGTCTCATCGCCTCTGCCGGGTACCAGTCCTTCTGCTCCCCAGGGAAACTGA
ACTCAGTTTGCATCAGCTGCTGCAACACCCCTCTTTGTAACGGGCCAAGGCCCAAGAAAAGGGGAAGTTC
TGCCTCGGCCCTCAGGCCAGGGCTCCGCACCACCATCCTGTTCCTCAAATTAGCCCTCTTCTCGGCACAC
TGCTGA

Translation (141 aa):
MWVLGIAATFCGLFLLPGFALQIQCYQCEEFQLNNDCSSPEFIVNCTVNVQDMCQKEVMEQSAGIMYRKS
CASSAACLIASAGYQSFCSPGKLNSVCISCCNTPLCNGPRPKKRGSSASALRPGLRTTILFLKLALFSAH
C


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH