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Report for CCDS9446.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9446.3 Public Homo sapiens 13 BORA 24 110 108 CCDS HistoryNCBI Gene:79866Re-query CCDS DB by CCDS ID:9446.3Re-query CCDS DB by GeneID:79866See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 9446.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9446.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000390667.11 ENSP00000375082.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000390667.11Link to Ensembl Protein Viewer:ENSP00000375082.6Re-query CCDS DB by Nucleotide ID:ENST00000390667Re-query CCDS DB by Protein ID:ENSP00000375082
Original member Current member EBI ENST00000651477.1 ENSP00000498664.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651477.1Link to Ensembl Protein Viewer:ENSP00000498664.1Re-query CCDS DB by Nucleotide ID:ENST00000651477Re-query CCDS DB by Protein ID:ENSP00000498664
Original member Current member NCBI NM_001286746.3 NP_001273675.2 Accepted alive Link to Nucleotide Sequence:NM_001286746.3Link to Protein Sequence:NP_001273675.2Re-query CCDS DB by Nucleotide ID:NM_001286746Re-query CCDS DB by Protein ID:NP_001273675Link to BLAST:NP_001273675.2
Original member Current member NCBI NM_024808.5 NP_079084.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024808.5Link to Protein Sequence:NP_079084.4Re-query CCDS DB by Nucleotide ID:NM_024808Re-query CCDS DB by Protein ID:NP_079084Link to BLAST:NP_079084.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273675.2 559 Q6PGQ7-1 559 100% 0 0
NP_079084.4 559 Q6PGQ7-1 559 100% 0 0

Chromosomal Locations for CCDS 9446.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 72728941 72729093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72731281 72731387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72734960 72735005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72737962 72738043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72743537 72743602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72744505 72744561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72744981 72745207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72745944 72746076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72746501 72747111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72753690 72753821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 72755151 72755216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGGAGATGTCAAGGAATCAAAGATGCAAATAACACCAGAAACTCCAGGAAGGATCCCTGTTTTAAATC
CTTTTGAAAGTCCTAGTGATTATTCTAATCTCCATGAACAAACTCTCGCCAGTCCTTCTGTTTTTAAATC
AACAAAATTACCAACTCCAGGGAAATTTAGATGGTCTATTGATCAACTAGCTGTAATAAATCCTGTAGAA
ATAGACCCAGAAGATATTCATCGTCAAGCTTTATACTTAAGTCATTCTCGAATAGATAAAGATGTGGAAG
ACAAAAGACAAAAAGCCATTGAAGAGTTTTTCACTAAAGATGTCATCGTACCCTCTCCTTGGACTGATCA
TGAAGGGAAACAGCTTTCACAATGTCATTCCAGTAAATGCACTAACATAAATAGTGACTCTCCAGTTGGA
AAAAAGCTGACCATTCATTCTGAGAAAAGCGATGCTGCTTGTCAGACATTGCTGTCTCTTCCTGTGGATT
TTAATTTAGAAAATATATTAGGTGACTATTTTAGAGCTGATGAATTTGCAGATCAATCTCCTGGAAACCT
CAGTTCTTCATCCCTCAGAAGAAAGCTGTTTTTAGATGGGAACGGAAGCATCTCCGACTCCTTACCTTCG
GCTTCTCCCGGAAGTCCTCACAGTGGTGTTCAAACATCACTAGAGATGTTTTATTCAATAGATTTGTCTC
CTGTAAAGTGTAGGAGCCCCTTGCAGACACCAAGTTCGGGGCAGTTTTCTTCTAGCCCTATTCAGGCTAG
TGCAAAAAAATACAGCTTGGGAAGCATAACTAGTCCTTCGCCTATTTCTTCACCCACTTTCTCACCAATT
GAATTTCAGATAGGAGAGACTCCACTCTCAGAACAAAGGAAGTTTACTGTTCATTCTCCTGATGCTTCAT
CTGGAACAAATTCTAATGGGATAACTAATCCGTGTATCAGAAGTCCTTATATAGATGGCTGCTCGCCAAT
TAAAAATTGGTCTCCTATGAGACTTCAGATGTATAGTGGTGGTACTCAGTATCGGACCTCAGTGATTCAG
ATACCTTTTACTCTTGAGACTCAAGGTGAAGATGAGGAAGATAAAGAGAATATTCCTTCCACAGATGTCT
CATCACCCGCCATGGATGCTGCTGGAATACACCTACGGCAGTTTAGTAATGAGGCTTCTACCCATGGTAC
ACATTTGGTTGTGACTGCCATGTCTGTTACACAAAATCAGTCCAGTGCTTCTGAGAAAGAATTAGCACTG
TTGCAGGATGTTGAAAGGGAGAAAGACAATAACACTGTGGATATGGTTGATCCTATAGAGATAGCAGATG
AGACCACTTGGATTAAGGAGCCGGTTGATAATGGCAGTTTACCCATGACTGATTTTGTAAGTGGCATTGC
CTTCAGTATTGAAAACTCTCATATGTGCATGTCACCTCTTGCTGAAAGCAGTGTCATTCCTTGTGAAAGC
AGTAACATTCAGATGGATAGTGGCTATAATACGCAGAATTGTGGAAGCAATATTATGGATACAGTTGGGG
CAGAAAGTTACTGCAAAGAAAGTGATGCACAAACATGTGAAGTTGAGAGTAAATCTCAAGCATTTAATAT
GAAGCAAGACCACACAACACAGAGGTGTTGGATGAAAACAGCAAGCCCTTTTCAATGCAGCAGTCCATAG

Translation (559 aa):
MGDVKESKMQITPETPGRIPVLNPFESPSDYSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVE
IDPEDIHRQALYLSHSRIDKDVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVG
KKLTIHSEKSDAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS
ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPI
EFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSVIQ
IPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQNQSSASEKELAL
LQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCES
SNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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