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Report for CCDS3533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3533.1 Public Homo sapiens 4 STATH 24 110 108 CCDS HistoryNCBI Gene:6779Re-query CCDS DB by CCDS ID:3533.1Re-query CCDS DB by GeneID:6779See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246895.9 ENSP00000246895.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246895.9Link to Ensembl Protein Viewer:ENSP00000246895.4Re-query CCDS DB by Nucleotide ID:ENST00000246895Re-query CCDS DB by Protein ID:ENSP00000246895
Original member Current member NCBI NM_003154.3 NP_003145.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003154.3Link to Protein Sequence:NP_003145.1Re-query CCDS DB by Nucleotide ID:NM_003154Re-query CCDS DB by Protein ID:NP_003145Link to BLAST:NP_003145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003145.1 62 P02808-1 62 100% 0 0

Chromosomal Locations for CCDS 3533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 69998438 69998488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69999667 69999687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 69999780 69999809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70000863 70000949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGAAGTTCCTTGTCTTTGCCTTCATCTTGGCTCTCATGGTTTCCATGATTGGAGCTGATTCATCTGAAG
AGAAATTTTTGCGTAGAATTGGAAGATTCGGTTATGGGTATGGCCCTTATCAGCCAGTTCCAGAACAACC
ACTATACCCACAACCATACCAACCACAATACCAACAATATACCTTTTAA

Translation (62 aa):
MKFLVFAFILALMVSMIGADSSEEKFLRRIGRFGYGYGPYQPVPEQPLYPQPYQPQYQQYTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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