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Report for CCDS10280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10280.1 Public Homo sapiens 15 PTPN9 24 110 108 CCDS HistoryNCBI Gene:5780Re-query CCDS DB by CCDS ID:10280.1Re-query CCDS DB by GeneID:5780See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618819.5 ENSP00000482732.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618819.5Link to Ensembl Protein Viewer:ENSP00000482732.1Re-query CCDS DB by Nucleotide ID:ENST00000618819Re-query CCDS DB by Protein ID:ENSP00000482732
Original member Current member NCBI NM_002833.4 NP_002824.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002833.4Link to Protein Sequence:NP_002824.1Re-query CCDS DB by Nucleotide ID:NM_002833Re-query CCDS DB by Protein ID:NP_002824Link to BLAST:NP_002824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002824.1 593 P43378 593 100% 0 0

Chromosomal Locations for CCDS 10280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75468769 75468983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75469792 75469999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75470680 75470830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75473689 75473767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75479848 75479914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75490208 75490301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75505675 75506003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75508917 75509027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75517259 75517364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75523121 75523245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75524209 75524298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75527118 75527261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75578714 75578776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGAGCCCGCGACCGCGCCCCGGCCCGACATGGCGCCGGAGCTGACCCCGGAGGAGGAGCAGGCTACCA
AGCAGTTTCTCGAAGAGATTAACAAGTGGACAGTTCAGTACAATGTTTCCCCGCTGTCTTGGAATGTGGC
TGTCAAGTTCCTCATGGCAAGGAAGTTTGATGTGCTCCGTGCCATAGAATTGTTCCACTCCTACAGAGAA
ACTCGAAGGAAGGAAGGCATTGTAAAGCTGAAACCTCATGAGGAACCTCTTCGTTCTGAGATCCTCAGTG
GAAAATTCACCATCTTAAATGTTCGGGACCCAACAGGAGCCTCCATTGCCCTCTTTACTGCCAGGTTGCA
TCATCCCCACAAGTCAGTCCAACATGTGGTACTTCAGGCTCTGTTTTACTTGCTAGACAGAGCTGTGGAT
AGCTTTGAAACTCAGAGGAATGGACTGGTGTTTATCTATGACATGTGTGGTTCTAATTATGCCAACTTTG
AGCTGGATCTTGGCAAGAAAGTCCTAAACCTGCTGAAGGGAGCATTTCCAGCTCGTTTGAAGAAGGTGCT
GATTGTGGGGGCACCCATATGGTTCCGAGTGCCCTATTCCATCATCAGTCTCCTCCTGAAGGACAAAGTC
CGGGAGAGGATTCAAATATTAAAGACATCTGAGGTCACGCAGCATCTGCCCAGGGAGTGTCTTCCAGAAA
ACCTGGGTGGGTACGTCAAAATTGATCTCGCCACTTGGAATTTCCAGTTCCTACCCCAGGTGAACGGCCA
CCCAGATCCCTTCGATGAGATCATCCTGTTCTCCCTCCCTCCTGCCTTAGACTGGGACTCAGTACATGTT
CCAGGTCCCCATGCTATGACCATCCAAGAGTTGGTGGACTATGTTAATGCCAGGCAAAAGCAAGGAATCT
ATGAGGAATATGAAGACATTCGTCGTGAGAACCCTGTTGGCACTTTCCACTGTTCCATGTCTCCAGGAAA
CCTAGAGAAAAACCGTTATGGGGATGTACCCTGCCTGGACCAAACTAGAGTGAAGCTAACAAAGCGAAGT
GGCCATACTCAGACAGATTACATCAATGCCAGTTTCATGGATGGCTACAAGCAGAAGAATGCTTACATTG
GCACACAAGGTCCTTTGGAGAATACCTATCGTGATTTCTGGCTCATGGTATGGGAGCAAAAAGTCTTGGT
GATTGTCATGACCACCCGCTTTGAGGAAGGCGGCAGGAGAAAGTGTGGCCAGTACTGGCCTTTAGAAAAA
GACTCTCGGATCCGATTTGGCTTCCTCACAGTGACCAATCTAGGCGTGGAGAACATGAATCATTATAAGA
AAACAACGCTAGAAATTCACAACACAGAGGAACGGCAGAAACGCCAGGTGACCCACTTCCAGTTCTTGAG
CTGGCCAGACTATGGTGTCCCTTCCTCAGCAGCTTCCCTCATTGACTTCTTGAGAGTGGTCAGAAACCAG
CAGAGTCTGGCTGTGAGCAACATGGGAGCACGCTCCAAAGGGCAGTGCCCTGAGCCACCCATTGTGGTCC
ATTGCAGTGCAGGCATTGGCAGGACAGGTACCTTCTGCTCACTGGACATCTGCCTGGCACAGCTGGAGGA
GCTTGGCACCCTTAATGTGTTCCAGACGGTGTCACGCATGAGGACCCAGAGGGCCTTCAGCATCCAGACC
CCTGAGCAGTACTATTTTTGCTACAAGGCCATCCTGGAGTTCGCAGAGAAGGAGGGCATGGTATCCTCTG
GCCAAAACCTGCTGGCCGTGGAGAGTCAGTAA

Translation (593 aa):
MEPATAPRPDMAPELTPEEEQATKQFLEEINKWTVQYNVSPLSWNVAVKFLMARKFDVLRAIELFHSYRE
TRRKEGIVKLKPHEEPLRSEILSGKFTILNVRDPTGASIALFTARLHHPHKSVQHVVLQALFYLLDRAVD
SFETQRNGLVFIYDMCGSNYANFELDLGKKVLNLLKGAFPARLKKVLIVGAPIWFRVPYSIISLLLKDKV
RERIQILKTSEVTQHLPRECLPENLGGYVKIDLATWNFQFLPQVNGHPDPFDEIILFSLPPALDWDSVHV
PGPHAMTIQELVDYVNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLDQTRVKLTKRS
GHTQTDYINASFMDGYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEK
DSRIRFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQ
QSLAVSNMGARSKGQCPEPPIVVHCSAGIGRTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQT
PEQYYFCYKAILEFAEKEGMVSSGQNLLAVESQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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