NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10969.1 Public Homo sapiens 16 RNF166 24 110 108 CCDS HistoryNCBI Gene:115992Re-query CCDS DB by CCDS ID:10969.1Re-query CCDS DB by GeneID:115992See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312838.9 ENSP00000326095.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312838.9Link to Ensembl Protein Viewer:ENSP00000326095.4Re-query CCDS DB by Nucleotide ID:ENST00000312838Re-query CCDS DB by Protein ID:ENSP00000326095
Original member Current member NCBI NM_178841.4 NP_849163.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178841.4Link to Protein Sequence:NP_849163.1Re-query CCDS DB by Nucleotide ID:NM_178841Re-query CCDS DB by Protein ID:NP_849163Link to BLAST:NP_849163.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849163.1 237 Q96A37-1 237 100% 0 0

Chromosomal Locations for CCDS 10969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88697568 88697633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88698502 88698609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88698971 88699085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88699620 88699732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88701262 88701418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88706171 88706325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCTATGTTCCGCAGCCTGGTGGCCTCGGCTCAGCAGCGGCAGCCGCCGGCCGGGCCGGCGGGCGGCG
ACAGCGGCCTGGAGGCGCAGTACACCTGCCCCATCTGCCTGGAGGTCTATCACCGGCCCGTGGCCATCGG
CAGCTGCGGCCACACGTTCTGCGGGGAGTGTCTCCAGCCCTGCCTGCAGGTGCCATCCCCGCTGTGCCCA
CTCTGCCGCCTGCCCTTCGACCCCAAGAAGGTGGACAAGGCCACCCACGTGGAGAAGCAGCTCTCATCCT
ACAAAGCGCCCTGTCGAGGCTGCAACAAAAAGGTGACCCTGGCAAAGATGAGAGTGCACATTTCGTCCTG
CCTGAAGGTCCAGGAGCAGATGGCCAACTGCCCCAAGTTCGTCCCCGTGGTGCCCACATCACAGCCTATC
CCCAGCAACATCCCCAACAGGTCCACCTTCGCCTGCCCGTACTGTGGTGCCCGCAACCTGGACCAGCAGG
AGCTGGTGAAGCACTGTGTGGAAAGCCACCGCAGCGACCCCAACCGCGTGGTGTGCCCCATCTGCTCGGC
AATGCCCTGGGGGGACCCCAGCTACAAGAGCGCCAACTTCCTGCAGCACCTGCTTCACCGACACAAGTTC
TCCTACGACACCTTTGTGGACTACAGTATTGACGAGGAGGCCGCCTTCCAGGCTGCTCTGGCCCTGTCTC
TCTCTGAGAACTGA

Translation (237 aa):
MAMFRSLVASAQQRQPPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCP
LCRLPFDPKKVDKATHVEKQLSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPI
PSNIPNRSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKF
SYDTFVDYSIDEEAAFQAALALSLSEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH