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Report for CCDS1238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1238.1 Public Homo sapiens 1 SPATA46 24 110 108 CCDS HistoryNCBI Gene:284680Re-query CCDS DB by CCDS ID:1238.1Re-query CCDS DB by GeneID:284680See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1238.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367935.10 ENSP00000356912.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367935.10Link to Ensembl Protein Viewer:ENSP00000356912.4Re-query CCDS DB by Nucleotide ID:ENST00000367935Re-query CCDS DB by Protein ID:ENSP00000356912
Original member Current member NCBI NM_182581.4 NP_872387.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182581.4Link to Protein Sequence:NP_872387.2Re-query CCDS DB by Nucleotide ID:NM_182581Re-query CCDS DB by Protein ID:NP_872387Link to BLAST:NP_872387.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872387.2 261 Q5T0L3 261 100% 0 0

Chromosomal Locations for CCDS 1238.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162374048 162374616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162375290 162375403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162376688 162376790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGAGAACTTCTCACTCCTCAGCATCTCTGGACCTCCAATCTCTTCCTCCGCCCTGAGTGCTTTTCCCG
ACATTATGTTCTCTCGTGCCACCAGCCTGCCAGACATTGCAAAGACAGCAGTACCCACTGAGGCATCCAG
CCCAGCTCAGGCCCTGCCACCCCAGTACCAAAGCATCATTGTCAGGCAAGGGATACAGAACACAGCGCTC
TCACCAGACTGCAGCTTGGGGGATACCCAGCACGGAGAGAAGCTGAGGCGGAACTGCACTATCTACCGGC
CCTGGTTCTCCCCCTACAGCTACTTCGTGTGTGCAGACAAAGAGAGCCAGCTGGAGGCCTATGACTTCCC
AGAGGTGCAGCAGGATGAGGGCAAGTGGGACAACTGCCTTTCTGAGGACATGGCTGAGAACATCTGTTCG
TCCTCTTCCTCCCCAGAGAACACTTGCCCTCGAGAAGCCACCAAGAAATCCAGGCATGGCCTGGACTCCA
TCACATCCCAGGACATCCTAATGGCTTCCAGGTGGCACCCAGCACAGCAGAATGGCTACAAGTGCGTGGC
CTGCTGCCGCATGTACCCCACCCTGGACTTCCTCAAGAGCCACATCAAGAGGGGCTTCAGGGAGGGCTTC
AGCTGCAAGGTGTACTACCGCAAGCTCAAAGCCCTCTGGAGCAAGGAGCAGAAGGCCCGGCTGGGAGACA
GGCTCTCCTCCGGCAGCTGCCAGGCCTTCAATAGTCCTGCTGAACACCTTAGGCAAATTGGCGGTGAAGC
CTACTTATGTCTCTAG

Translation (261 aa):
MENFSLLSISGPPISSSALSAFPDIMFSRATSLPDIAKTAVPTEASSPAQALPPQYQSIIVRQGIQNTAL
SPDCSLGDTQHGEKLRRNCTIYRPWFSPYSYFVCADKESQLEAYDFPEVQQDEGKWDNCLSEDMAENICS
SSSSPENTCPREATKKSRHGLDSITSQDILMASRWHPAQQNGYKCVACCRMYPTLDFLKSHIKRGFREGF
SCKVYYRKLKALWSKEQKARLGDRLSSGSCQAFNSPAEHLRQIGGEAYLCL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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