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Report for CCDS3851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3851.1 Public Homo sapiens 4 TRIML1 24 110 108 CCDS HistoryNCBI Gene:339976Re-query CCDS DB by CCDS ID:3851.1Re-query CCDS DB by GeneID:339976See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332517.4 ENSP00000327738.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332517.4Link to Ensembl Protein Viewer:ENSP00000327738.3Re-query CCDS DB by Nucleotide ID:ENST00000332517Re-query CCDS DB by Protein ID:ENSP00000327738
Original member Current member NCBI NM_178556.5 NP_848651.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178556.5Link to Protein Sequence:NP_848651.2Re-query CCDS DB by Nucleotide ID:NM_178556Re-query CCDS DB by Protein ID:NP_848651Link to BLAST:NP_848651.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848651.2 468 Q8N9V2 468 100% 0 0

Chromosomal Locations for CCDS 3851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 188139559 188139966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 188140528 188140623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 188142252 188142482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 188143838 188143860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 188144036 188144133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 188146822 188147372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGTCTACAGCAGATCTGATGGAGAACCTCAGGGAGGAACTCACCTGTTTCATCTGCTTAGACTATTTCA
GCAGCCCAGTGACCACCGAGTGTGGGCACAGCTTTTGTCTGGTGTGTCTCCTCAGGAGCTGGGAGGAACA
TAACACACCTTTATCTTGTCCTGAGTGCTGGAGGACCTTGGAGGGCCCGCATTTCCAGTCAAACGAGCGT
CTGGGGAGGCTGGCCAGCATCGCCAGGCAGCTCCGGTCCCAGGTGCTGCAGAGCGAGGATGAGCAGGGCA
GCTACGGGAGGATGCCCACCACTGCCAAGGCGCTCTCCGATGACGAGCAGGGTGGAAGCGCCTTCGTAGC
CCAGAGCCATGGTGCAAACAGAGTGCATCTCTCCAGCGAGGCTGAGGAGCATCACAGAGAGAAACTCCAG
GAAATCCTGAATCTTTTGCGTGTAAGGAGAAAGGAAGCTCAGGCTGTACTAACCCATGAGAAGGAGAGAG
TGAAACTGTGCCAGGAAGAAACAAAGACTTGTAAACAGGTTGTTGTGTCAGAATACATGAAAATGCACCA
GTTCCTGAAGGAAGAGGAGCAGCTGCAACTCCAGCTACTAGAACAGGAAGAGAAAGAGAACATGAGGAAG
CTGAGGAACAATGAGATCAAACTGACCCAGCAAATCAGAAGCCTAAGCAAAATGATCGCACAGATTGAGT
CCTCAAGTCAAAGCTCGGCTTTCGAATCTCTTGAGGAAGTGAGAGGAGCCCTGGAAAGGAGCGAGCCACT
CTTGCTTCAGTGTCCAGAGGCCACCACCACAGAGCTGAGTCTGTGCCGCATCACGGGAATGAAGGAGATG
CTAAGAAAATTCAGCACGGAGATAACGCTGGACCCAGCCACAGCTAATGCCTATCTCGTGTTGTCGGAGG
ATCTGAAGAGTGTGAAATATGGGGGAAGCAGACAGCAGCTACCCGACAACCCGGAAAGATTTGACCAGTC
TGCGACTGTGCTGGGTACTCAGATCTTCACCAGTGGGAGACACTACTGGGAGGTGGAGGTGGGAAACAAG
ACCGAGTGGGAAGTGGGCATCTGCAAGGACTCTGTGAGCAGAAAGGGGAATCTCCCCAAGCCACCTGGGG
ACCTGTTCTCACTAATAGGTTTAAAAATCGGAGATGATTACAGCCTCTGGGTCTCGTCACCTTTGAAAGG
TCAGCACGTCAGAGAGCCTGTGTGTAAGGTTGGTGTCTTCCTGGACTATGAATCTGGACATATAGCATTC
TACAACGGGACGGATGAATCCCTCATCTACAGCTTCCCGCAGGCTTCTTTCCAAGAGGCCCTCAGGCCTA
TCTTTTCCCCCTGCCTCCCAAATGAGGGGACAAACACAGACCCTCTCACCATCTGCTCACTGAACAGCCA
CGTCTGA

Translation (468 aa):
MSTADLMENLREELTCFICLDYFSSPVTTECGHSFCLVCLLRSWEEHNTPLSCPECWRTLEGPHFQSNER
LGRLASIARQLRSQVLQSEDEQGSYGRMPTTAKALSDDEQGGSAFVAQSHGANRVHLSSEAEEHHREKLQ
EILNLLRVRRKEAQAVLTHEKERVKLCQEETKTCKQVVVSEYMKMHQFLKEEEQLQLQLLEQEEKENMRK
LRNNEIKLTQQIRSLSKMIAQIESSSQSSAFESLEEVRGALERSEPLLLQCPEATTTELSLCRITGMKEM
LRKFSTEITLDPATANAYLVLSEDLKSVKYGGSRQQLPDNPERFDQSATVLGTQIFTSGRHYWEVEVGNK
TEWEVGICKDSVSRKGNLPKPPGDLFSLIGLKIGDDYSLWVSSPLKGQHVREPVCKVGVFLDYESGHIAF
YNGTDESLIYSFPQASFQEALRPIFSPCLPNEGTNTDPLTICSLNSHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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