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Report for CCDS31543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31543.1 Public Homo sapiens 11 OR9Q1 24 110 108 CCDS HistoryNCBI Gene:219956Re-query CCDS DB by CCDS ID:31543.1Re-query CCDS DB by GeneID:219956See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335397.3 ENSP00000334934.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335397.3Link to Ensembl Protein Viewer:ENSP00000334934.3Re-query CCDS DB by Nucleotide ID:ENST00000335397Re-query CCDS DB by Protein ID:ENSP00000334934
Original member Current member EBI ENST00000612174.1 ENSP00000479549.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612174.1Link to Ensembl Protein Viewer:ENSP00000479549.1Re-query CCDS DB by Nucleotide ID:ENST00000612174Re-query CCDS DB by Protein ID:ENSP00000479549
Original member Current member NCBI NM_001005212.4 NP_001005212.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005212.4Link to Protein Sequence:NP_001005212.1Re-query CCDS DB by Nucleotide ID:NM_001005212Re-query CCDS DB by Protein ID:NP_001005212Link to BLAST:NP_001005212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005212.1 310 Q8NGQ5 310 100% 0 0

Chromosomal Locations for CCDS 31543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58179445 58180377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGCAGAGATGAACCTCACCTTGGTGACCGAGTTCCTCCTTATTGCATTCACTGAATATCCTGAATGGG
CACTCCCTCTCTTCCTCTTGTTTTTATTTATGTATCTCATCACCGTATTGGGGAACTTAGAGATGATTAT
TCTGATCCTCATGGATCACCAGCTCCACGCTCCAATGTATTTCCTTCTGAGTCACCTCGCTTTCATGGAC
GTCTGCTACTCATCTATCACTGTCCCCCAGATGCTGGCAGTGCTGCTGGAGCATGGGGCAGCTTTATCTT
ACACACGCTGTGCTGCTCAGTTCTTTCTGTTCACCTTCTTTGGTTCCATCGACTGCTACCTCTTGGCCCT
CATGGCCTATGACCGCTACTTGGCTGTGTGCCAGCCCCTGCTTTATGTCACCATCCTGACACAGCAGGCC
CGCTTGAGTCTTGTGGCTGGGGCTTACGTTGCTGGTCTCATCAGTGCCTTGGTGCGGACAGTCTCAGCCT
TCACTCTCTCCTTCTGTGGAACCAGTGAGATTGACTTTATTTTCTGTGACCTCCCTCCTCTGTTAAAGTT
GACCTGTGGGGAGAGCTACACTCAAGAAGTGCTGATTATTATGTTTGCCATTTTTGTCATCCCTGCTTCC
ATGGTGGTGATCTTGGTGTCCTACCTGTTTATCATCGTGGCCATCATGGGGATCCCTGCTGGAAGCCAGG
CCAAGACCTTCTCCACCTGCACCTCCCACCTCACTGCTGTGTCACTCTTCTTTGGTACCCTCATCTTCAT
GTACTTGAGAGGTAACTCAGATCAGTCTTCGGAGAAGAATCGGGTAGTGTCTGTGCTTTACACAGAGGTC
ATCCCCATGTTGAATCCCCTCATCTACAGCCTGAGGAACAAGGAAGTGAAGGAGGCCCTGAGAAAAATTC
TCAATAGAGCCAAGTTGTCCTAA

Translation (310 aa):
MAEMNLTLVTEFLLIAFTEYPEWALPLFLLFLFMYLITVLGNLEMIILILMDHQLHAPMYFLLSHLAFMD
VCYSSITVPQMLAVLLEHGAALSYTRCAAQFFLFTFFGSIDCYLLALMAYDRYLAVCQPLLYVTILTQQA
RLSLVAGAYVAGLISALVRTVSAFTLSFCGTSEIDFIFCDLPPLLKLTCGESYTQEVLIIMFAIFVIPAS
MVVILVSYLFIIVAIMGIPAGSQAKTFSTCTSHLTAVSLFFGTLIFMYLRGNSDQSSEKNRVVSVLYTEV
IPMLNPLIYSLRNKEVKEALRKILNRAKLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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