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Report for CCDS14796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14796.1 Public Homo sapiens Y RBMY1A1 24 110 108 CCDS HistoryNCBI Gene:5940Re-query CCDS DB by CCDS ID:14796.1Re-query CCDS DB by GeneID:5940See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382707.6 ENSP00000372154.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382707.6Link to Ensembl Protein Viewer:ENSP00000372154.2Re-query CCDS DB by Nucleotide ID:ENST00000382707Re-query CCDS DB by Protein ID:ENSP00000372154
Original member Current member NCBI NM_005058.4 NP_005049.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005058.4Link to Protein Sequence:NP_005049.1Re-query CCDS DB by Nucleotide ID:NM_005058Re-query CCDS DB by Protein ID:NP_005049Link to BLAST:NP_005049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005049.1 496 P0DJD3-1 496 100% 0 0

Chromosomal Locations for CCDS 14796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 21536892 21537000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21537475 21537578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21540598 21540775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21542691 21542843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21544854 21544968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21545924 21546034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21546476 21546586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21547021 21547131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21548053 21548163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21548250 21548338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21548750 21549048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGTAGAAGCAGATCATCCTGGCAAGCTTTTCATTGGTGGCCTCAATAGAGAAACCAATGAGAAGATGC
TTAAAGCAGTATTTGGGAAACATGGTCCCATATCAGAAGTTCTTTTGATAAAGGATCGAACCAGCAAATC
CAGAGGCTTTGCATTTATTACTTTTGAGAACCCTGCAGATGCTAAGAATGCTGCCAAAGATATGAATGGA
AAGTCTTTGCATGGAAAAGCAATAAAAGTAGAACAAGCCAAGAAACCATCTTTTCAAAGTGGTGGTAGGC
GGAGACCACCAGCTTCTTCGAGAAACAGAAGCCCTTCAGGAAGTCTGAGATCTGCAAGAGGAAGCCGTGG
AGGAACAAGAGGGTGGCTTCCCTCACATGAAGGGCACCTGGATGATGGTGGATACACTCCTGATCTCAAG
ATGAGTTATTCTAGGGGACTCATTCCAGTTAAAAGAGGTCCATCTTCAAGAAGTGGAGGTCCTCCTCCGA
AAAAATCTGCTCCTTCTGCTGTGGCAAGAAGCAATAGTTGGATGGGAAGCCAAGGTCCCATGTCACAAAG
AAGAGAGAATTATGGAGTTCCTCCACGCAGAGCGACAATATCTTCCTGGAGAAATGATCGCATGTCAACA
AGACATGATGGTTATGCAACTAACGATGGAAATCATCCAAGTTGCCAAGAAACGAGGGATTATGCTCCAC
CATCTAGAGGCTATGCATACCGTGATAATGGTCATTCTAATCGGGATGAACATTCCTCTAGAGGATATAG
AAATCATCGAAGTTCCCGAGAAACTAGGGATTATGCTCCACCATCTAGAGGCCATGCATACCGTGATTAT
GGTCATTCTCGTCGGGATGAAAGTTATTCTAGAGGATACAGAAATCGTCGAAGTTCCCGAGAAACTAGGG
AGTATGCTCCACCATCTAGAGGCCATGGATACCGTGATTATGGTCATTCTCGTCGACATGAAAGTTATTC
TAGAGGATATAGAAATCATCCAAGTTCCCGAGAAACCAGGGATTATGCTCCACCACATAGAGACTATGCA
TACCGTGATTATGGTCATTCTAGTTGGGATGAACATTCCTCTAGAGGATATAGTTATCATGATGGCTACG
GTGAGGCCCTTGGTAGAGATCATTCTGAACATCTAAGTGGAAGTTCTTATAGAGATGCACTTCAGAGATA
CGGGACCTCTCATGGTGCACCACCTGCAAGAGGGCCTCGGATGTCTTATGGTGGAAGCACCTGCCACGCA
TATAGTAATACACGAGATAGATATGGCAGAAGTTGGGAGAGTTACTCGAGCTGTGGTGATTTTCATTATT
GTGATCGTGAGCATGTTTGCAGAAAAGACCAAAGGAATCCGCCTTCTCTGGGTAGGGTGCTCCCTGATCC
TCGTGAAGCATGTGGTAGCTCAAGTTATGTGGCATCTATAGTAGATGGTGGGGAGAGTCGATCTGAAAAA
GGAGACTCGAGCAGATATTAA

Translation (496 aa):
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG
KSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSHEGHLDDGGYTPDLK
MSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST
RHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDY
GHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDGGESRSEK
GDSSRY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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