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Report for CCDS12270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12270.1 Public Homo sapiens 19 ZNF563 24 110 108 CCDS HistoryNCBI Gene:147837Re-query CCDS DB by CCDS ID:12270.1Re-query CCDS DB by GeneID:147837See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293725.10 ENSP00000293725.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293725.10Link to Ensembl Protein Viewer:ENSP00000293725.5Re-query CCDS DB by Nucleotide ID:ENST00000293725Re-query CCDS DB by Protein ID:ENSP00000293725
Original member Current member NCBI NM_145276.3 NP_660319.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145276.3Link to Protein Sequence:NP_660319.1Re-query CCDS DB by Nucleotide ID:NM_145276Re-query CCDS DB by Protein ID:NP_660319Link to BLAST:NP_660319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660319.1 476 Q8TA94-1 476 100% 0 0

Chromosomal Locations for CCDS 12270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12318594 12319833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12321272 12321332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12322585 12322711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12333480 12333482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGACGCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAATGGGCTTTGCTGGGTCCAT
CACAGAAGAATTTATACAGATATGTGATGCAAGAAACCATCAGGAACCTGGACTGTATAAGAATGATATG
GGAAGAACAGAATACTGAAGATCAGTACAAAAATCCTAGGAGAAATCTAAGATGTCATATGGTAGAGAGA
TTCAGTGAAAGTAAAGACAGTAGTCAGTGTGGAGAAACATTTAGCCTCATTCGAGATAGTATTGTGAACA
ACAGCATTTGTCCTGGAGAAGATCCATGTCAAAGCGCTGAGTGTGAAGAAGTCATAATGGGTCATTTATC
CCTTAATAGCCACATCAGAGTTGATTCTGGACACAAACCACATGAGTATCAGGAATATGGAGAGAAGCCA
CATACACATAAACAACGTGGGAAAGCCTTCAGTTACCATCACTCCTTTCAGTCGCGTGGAAGGCCTCACA
CTGGAAAGAAACGCTATGAGTGTAAGGAATGTGGAAAAACCTTCAGTTCTCGTAGAAACCTTCGAAGACA
CATGGTAGTGCAAGGTGGAAATAGACCTTATAAATGTAAGTTGTGTGGGAAAGCTTTTTTTTGGCCCAGT
TTATTACGTATGCATGAAAGAACTCACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCT
TTCCTTTTTACAGTTCCTATCGAAGACATGAGAGAATGCACACTGGGGAGAAACCGTATGAATGTAAGCA
GTGTTCTAAAGCCTTGCCTGATTCCAGTTCCTATATAAGACATGAAAGAACTCACACTGGAGAGAAACCA
TATACATGTAAACAGTGTGGGAAAGCCTTCAGTGTTTCCAGTTCCCTTCGAAGACATGAAACCACTCACA
GTGCAGAGAAACCCTATGAGTGTAAGCAATGCGGGAAAACATTTCATCATCTTGGAAGCTTTCAGATACA
CATGAAAAGGCACACTGGAGATCGACCTCATAAATGTAAGATATGTGGGAAAGGCTTTGATCGTCCCAGT
TTAGTTCGATATCATGAACGAATTCACACTGGAGAGAAACCCTATGAATGCAAGCAGTGTGGGAAAACGT
TATCTCATAGCTCAAGCTTTCGAAGACACATGATAATGCACACTGGAGGTGGACCTCATAAATGCAAGAT
ATGTGGGAAAGCTTTTGTTTATCCTAGTGTATGTCAAAGACACGAAAAGTCTCACAGTGGAGAGAAACCC
TATGAATGCAAGCAGTGTGGGAAAGCGTTATCTCATAGCTCAAGCTTTCGAAGACATATGGTAATGCATA
CGGGAGATGGGCCGAATAAATGCAAGGTATGTGGGAAAGCCTTTGTTTATCCCAGTGTATGTCAAAGACA
TGAAAAGACTCACTGGAGAGAAACAATATGA

Translation (476 aa):
MDAVAFEDVAVNFTQEEWALLGPSQKNLYRYVMQETIRNLDCIRMIWEEQNTEDQYKNPRRNLRCHMVER
FSESKDSSQCGETFSLIRDSIVNNSICPGEDPCQSAECEEVIMGHLSLNSHIRVDSGHKPHEYQEYGEKP
HTHKQRGKAFSYHHSFQSRGRPHTGKKRYECKECGKTFSSRRNLRRHMVVQGGNRPYKCKLCGKAFFWPS
LLRMHERTHTGEKPYECKQCSKAFPFYSSYRRHERMHTGEKPYECKQCSKALPDSSSYIRHERTHTGEKP
YTCKQCGKAFSVSSSLRRHETTHSAEKPYECKQCGKTFHHLGSFQIHMKRHTGDRPHKCKICGKGFDRPS
LVRYHERIHTGEKPYECKQCGKTLSHSSSFRRHMIMHTGGGPHKCKICGKAFVYPSVCQRHEKSHSGEKP
YECKQCGKALSHSSSFRRHMVMHTGDGPNKCKVCGKAFVYPSVCQRHEKTHWRETI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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