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Report for CCDS5022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5022.1 Public Homo sapiens 6 RRAGD 24 110 108 CCDS HistoryNCBI Gene:58528Re-query CCDS DB by CCDS ID:5022.1Re-query CCDS DB by GeneID:58528See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369415.9 ENSP00000358423.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369415.9Link to Ensembl Protein Viewer:ENSP00000358423.4Re-query CCDS DB by Nucleotide ID:ENST00000369415Re-query CCDS DB by Protein ID:ENSP00000358423
Original member Current member NCBI NM_021244.5 NP_067067.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021244.5Link to Protein Sequence:NP_067067.1Re-query CCDS DB by Nucleotide ID:NM_021244Re-query CCDS DB by Protein ID:NP_067067Link to BLAST:NP_067067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067067.1 400 Q9NQL2-1 400 100% 0 0

Chromosomal Locations for CCDS 5022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89368056 89368207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89372437 89372585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89377671 89377813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89379224 89379338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89380168 89380367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89387295 89387590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 89411846 89411993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGCCAGGTGCTGGGGAAGCCGCAGCCGCAGGACGAGGACGACGCGGAGGAGGAGGAGGAGGAGGATG
AGCTGGTGGGGCTAGCGGACTACGGAGACGGGCCCGACTCCTCCGACGCCGATCCGGACAGCGGCACAGA
GGAGGGAGTTCTGGACTTCAGTGACCCCTTCAGCACTGAAGTGAAGCCGAGAATCCTGCTCATGGGCCTG
AGGAGAAGCGGCAAGTCGTCTATTCAGAAAGTTGTCTTTCACAAAATGTCTCCCAACGAAACTCTGTTCT
TGGAGAGCACTAATAAGATATGCCGGGAAGATGTTTCCAACAGCTCCTTTGTCAATTTTCAGATTTGGGA
CTTCCCAGGACAGATTGACTTTTTTGACCCTACATTTGACTATGAGATGATCTTCCGGGGAACAGGAGCA
CTGATATTTGTCATTGACTCACAGGATGATTACATGGAAGCCCTGGCCAGGCTCCACCTCACGGTGACCA
GGGCCTACAAAGTGAATACTGACATCAACTTCGAGGTGTTTATTCATAAAGTGGATGGTCTGTCAGATGA
CCACAAAATTGAAACCCAAAGAGATATTCACCAGAGGGCAAACGATGACCTTGCAGATGCTGGATTAGAA
AAAATTCACCTCAGCTTTTATCTGACAAGCATATATGATCATTCAATATTTGAAGCTTTTAGCAAAGTTG
TTCAGAAACTGATTCCACAACTCCCAACTCTGGAGAATTTGCTGAACATCTTTATCTCAAATTCTGGAAT
TGAAAAGGCATTTCTATTTGATGTGGTCAGTAAAATTTATATTGCAACTGATAGTACTCCGGTGGATATG
CAAACCTATGAGCTCTGCTGTGATATGATAGATGTGGTTATTGACATCTCTTGTATTTATGGTCTCAAAG
AAGATGGAGCAGGAACCCCCTATGACAAGGAATCCACAGCCATCATAAAGCTTAATAATACAACCGTGCT
TTATTTAAAAGAGGTGACAAAGTTCCTGGCTCTCGTTTGCTTTGTCAGAGAGGAAAGCTTTGAAAGAAAA
GGGCTAATTGACTATAATTTTCATTGCTTCCGGAAGGCCATTCATGAAGTTTTTGAGGTGAGAATGAAAG
TAGTAAAATCTCGAAAGGTTCAGAATCGGCTGCAGAAGAAAAAGAGAGCCACCCCTAATGGGACCCCTAG
AGTGCTGCTGTAG

Translation (400 aa):
MSQVLGKPQPQDEDDAEEEEEEDELVGLADYGDGPDSSDADPDSGTEEGVLDFSDPFSTEVKPRILLMGL
RRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDPTFDYEMIFRGTGA
LIFVIDSQDDYMEALARLHLTVTRAYKVNTDINFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE
KIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIATDSTPVDM
QTYELCCDMIDVVIDISCIYGLKEDGAGTPYDKESTAIIKLNNTTVLYLKEVTKFLALVCFVREESFERK
GLIDYNFHCFRKAIHEVFEVRMKVVKSRKVQNRLQKKKRATPNGTPRVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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