NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19919.1 Public Mus musculus 6 Mdfic 23 108 98 CCDS HistoryNCBI Gene:16543Re-query CCDS DB by CCDS ID:19919.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101663.9 ENSMUSP00000099186.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101663.9Link to Ensembl Protein Viewer:ENSMUSP00000099186.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101663Re-query CCDS DB by Protein ID:ENSMUSP00000099186
Original member Current member EBI ENSMUST00000120512.7 ENSMUSP00000113050.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120512.7Link to Ensembl Protein Viewer:ENSMUSP00000113050.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120512Re-query CCDS DB by Protein ID:ENSMUSP00000113050
Original member Current member EBI ENSMUST00000189359.6 ENSMUSP00000140208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189359.6Link to Ensembl Protein Viewer:ENSMUSP00000140208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189359Re-query CCDS DB by Protein ID:ENSMUSP00000140208
Original member Current member NCBI NM_175088.5 NP_780297.3 Accepted alive Link to Nucleotide Sequence:NM_175088.5Link to Protein Sequence:NP_780297.3Re-query CCDS DB by Nucleotide ID:NM_175088Re-query CCDS DB by Protein ID:NP_780297Link to BLAST:NP_780297.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780297.3 247 Q8BX65-1 247 100% 0 0

Chromosomal Locations for CCDS 19919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 15721271 15721364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 15740988 15741110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 15770214 15770492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 15799618 15799865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGTCCTGCGCGGGTGAAGCCCTCGCTCCCGGGCCCGCGGAGCAGCAGTGCCCGGTCGAGGCGGGCGGCG
GCCGGCTGGGCTCCCCGGCCCACGAAGCATGTAATGAGGACAATACGGAGAAAGATAAAAGGCCAGCTAC
CAGTGGCCATACCAGGTGTGGGCTGATGCGGGACCAGTCCATTTGGCCAAATCCTTCAGCTGGTGAACTT
GTCAGAACCCAACCTGAACGTCTGCCTCAACTCCAGACATCAGCACAGGAACCCGGCAAGGAGGAAACAG
GCAAGATAAAGAATGGCGGCCACACAAGGATGAGCAATGGGAATGGAATTCCTCACGGAGCCAAACATGT
GTCCGTGGAGAATCACAAGATATCAGCCCCCGTTTCTCAGAAGATGCACAGAAAAATCCAGTCCAGCTTG
TCTGTAAACAATGACATCAGTAAGAAGAGTAAAGTAAATGCTGTCTTTTCCCCAAAAGCAGCCTCCTCAC
CCGAAGACTGCTGTGTCCACTGTATCCTGGCATGCTTGTTCTGTGAATTCCTGACCCTCTGCAACATTGT
CCTGGGACAAGCTTCGTGTGGCATCTGCACCTCCGAAGCCTGCTGCTGTTGCTGTGGCGATGAGATGGGT
GATGACTGTAGCTGCCCCTGTGACATGGACTGCGGCATCATGGATGCCTGTTGTGAATCGTCAGACTGTC
TAGAAATCTGCATGGAATGCTGTGGCATCTGTTTTCCTTCATAA

Translation (247 aa):
MSCAGEALAPGPAEQQCPVEAGGGRLGSPAHEACNEDNTEKDKRPATSGHTRCGLMRDQSIWPNPSAGEL
VRTQPERLPQLQTSAQEPGKEETGKIKNGGHTRMSNGNGIPHGAKHVSVENHKISAPVSQKMHRKIQSSL
SVNNDISKKSKVNAVFSPKAASSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCGDEMG
DDCSCPCDMDCGIMDACCESSDCLEICMECCGICFPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH