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Report for CCDS2573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2573.1 Public Homo sapiens 3 THUMPD3 24 110 108 CCDS HistoryNCBI Gene:25917Re-query CCDS DB by CCDS ID:2573.1Re-query CCDS DB by GeneID:25917See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345094.7 ENSP00000339532.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345094.7Link to Ensembl Protein Viewer:ENSP00000339532.3Re-query CCDS DB by Nucleotide ID:ENST00000345094Re-query CCDS DB by Protein ID:ENSP00000339532
Original member Current member EBI ENST00000452837.7 ENSP00000395893.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452837.7Link to Ensembl Protein Viewer:ENSP00000395893.2Re-query CCDS DB by Nucleotide ID:ENST00000452837Re-query CCDS DB by Protein ID:ENSP00000395893
Original member Current member EBI ENST00000515662.6 ENSP00000424064.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515662.6Link to Ensembl Protein Viewer:ENSP00000424064.1Re-query CCDS DB by Nucleotide ID:ENST00000515662Re-query CCDS DB by Protein ID:ENSP00000424064
Original member Current member NCBI NM_001114092.2 NP_001107564.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114092.2Link to Protein Sequence:NP_001107564.1Re-query CCDS DB by Nucleotide ID:NM_001114092Re-query CCDS DB by Protein ID:NP_001107564Link to BLAST:NP_001107564.1
Original member Current member NCBI NM_015453.3 NP_056268.2 Accepted alive Link to Nucleotide Sequence:NM_015453.3Link to Protein Sequence:NP_056268.2Re-query CCDS DB by Nucleotide ID:NM_015453Re-query CCDS DB by Protein ID:NP_056268Link to BLAST:NP_056268.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107564.1 507 Q9BV44 507 100% 0 0
NP_056268.2 507 Q9BV44 507 100% 0 0

Chromosomal Locations for CCDS 2573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9365069 9365320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9366908 9366985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9371060 9371536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9374516 9374646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9377819 9377888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9380503 9380618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9383199 9383309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9384212 9384335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9384524 9384688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTGTGACATTGAAGAAGCCACTAACCAACTCCTAGATGTGAACCTTCATGAGAACCAGAAGTCTGTAC
AAGTGACAGAAAGTGACCTCGGAAGTGAATCTGAGCTTCTAGTCACTATTGGAGCCACTGTACCTACTGG
CTTTGAGCAAACAGCTGCAGATGAAGTCAGAGAGAAACTTGGGTCATCATGCAAAATCAGCAGAGACCGT
GGCAAGATATATTTTGTCATTTCAGTGGAAAGTCTGGCACAGGTTCATTGTCTGAGATCAGTTGATAACT
TATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAGTTCAAACAAACAAAGGAAGAAGTTCTAAAGGATTT
TGAAGACTTGGCTGGAAAACTCCCATGGTCAAACCCCTTAAAAGTGTGGAAAATTAATGCCAGTTTTAAA
AAGAAAAAAGCAAAGCGCAAAAAGATAAATCAGAATTCAAGTAAAGAGAAGATTAATAATGGACAAGAAG
TCAAAATCGATCAGAGAAATGTTAAAAAAGAGTTCACTAGCCATGCTTTAGATTCTCATATCTTAGATTA
TTATGAAAATCCAGCCATCAAAGAGGATGTATCAACATTAATAGGTGATGATTTGGCATCTTGCAAAGAT
GAGACTGATGAAAGCTCAAAAGAAGAAACTGAGCCTCAAGTGCTGAAGTTTAGAGTCACATGCAACAGGG
CAGGAGAGAAACATTGCTTTACCTCAAATGAGGCTGCAAGAGATTTTGGGGGTGCTGTTCAAGATTATTT
TAAGTGGAAGGCCGACATGACCAACTTTGATGTGGAGGTTCTTTTGAACATCCATGATAATGAAGTCATT
GTGGGCATTGCATTGACTGAAGAGAGTCTCCACCGAAGAAATATAACACATTTTGGACCTACAACTCTTA
GATCAACTCTTGCCTATGGGATGCTCAGGCTCTGTGATCCTCTACCTTATGATATAATAGTCGATCCAAT
GTGTGGAACTGGGGCAATACCAATAGAGGGGGCCACTGAATGGTCTGACTGTTTCCATATTGCTGGTGAT
AATAATCCACTGGCTGTGAATAGAGCAGCAAATAACATTGCATCTTTATTGACCAAGAGCCAAATTAAAG
AAGGCAAACCCTCCTGGGGCTTGCCCATAGATGCTGTTCAGTGGGATATCTGCAATCTGCCATTGAGAAC
TGGCTCTGTGGATATTATTGTAACAGATTTGCCATTTGGAAAAAGGATGGGATCCAAGAAGAGAAACTGG
AACCTTTATCCAGCTTGCCTACGGGAGATGAGCCGTGTCTGCACACCTACCACAGGCCGAGCTGTACTAC
TTACTCAAGACACAAAATGCTTTACCAAGGCGTTATCTGGAATGCGACACGTATGGCGAAAGGTGGATAC
AGTCTGGGTGAACGTTGGTGGTCTTCGTGCTGCAGTTTACGTTCTGATACGTACACCTCAAGCTTTTGTT
CATCCTTCAGAACAAGACGGAGAAAGAGGAACTCTTTGGCAATGCAAAGAATGA

Translation (507 aa):
MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDR
GKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFK
KKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKD
ETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVI
VGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGD
NNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVYVLIRTPQAFV
HPSEQDGERGTLWQCKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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