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Report for CCDS8045.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8045.2 Public Homo sapiens 11 LGALS12 24 110 108 CCDS HistoryNCBI Gene:85329Re-query CCDS DB by CCDS ID:8045.2Re-query CCDS DB by GeneID:85329See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8045.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394618.9 ENSP00000378116.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394618.9Link to Ensembl Protein Viewer:ENSP00000378116.4Re-query CCDS DB by Nucleotide ID:ENST00000394618Re-query CCDS DB by Protein ID:ENSP00000378116
Original member Current member NCBI NM_033101.4 NP_149092.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033101.4Link to Protein Sequence:NP_149092.3Re-query CCDS DB by Nucleotide ID:NM_033101Re-query CCDS DB by Protein ID:NP_149092Link to BLAST:NP_149092.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149092.3 314 Q96DT0-5 314 100% 0 0

Chromosomal Locations for CCDS 8045.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63506459 63506527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63508553 63508641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63508778 63508991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63509778 63509897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63510463 63510501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63511079 63511105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63511752 63511840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63515563 63515713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63516247 63516393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTCACCTGGAGAAAAACTGGACCCAATTCCTGACAGCTTCATTCTGCAACCACCAGTCTTCCACCCGG
TGGTTCCTTATGTCACGACGATTTTTGGAGGCCTGCATGCAGGCAAGATGGTCATGCTGCAAGGAGTGGT
CCCTCTAGATGCACACAGGTTTCAGGTGGACTTCCAGTGTGGCTGCAGCCTGTGTCCCCGGCCAGATATC
GCCTTCCACTTCAACCCTCGCTTCCATACCACCAAGCCCCATGTCATCTGCAACACCCTGCATGGTGGAC
GCTGGCAAAGGGAGGCCCGGTGGCCCCACCTGGCCCTGCGAAGAGGCTCCAGCTTCCTCATCCTCTTTCT
CTTCGGGAATGAGGAAGTGAAGGTGAGTGTGAATGGACAGCACTTTCTCCACTTCCGCTACCGGCTCCCA
CTGTCTCATGTGGACACGCTGGGTATATTTGGTGACATCCTGGTAGAGGCTGTTGGATTCCTGAACATCA
ATCCATTTGTGGAGGGCAGCAGAGAGTACCCAGCTGGACATCCTTTCCTGCTGATGAGCCCCAGGCTGGA
GGTGCCCTGCTCACATGCTCTTCCCCAGGGTCTCTCGCCTGGGCAGGTCATCATAGTACGGGGACTGGTC
TTGCAAGAGCCGAAGCATTTTACTGTGAGCCTGAGGGACCAGGCTGCCCATGCTCCTGTGACACTCAGGG
CCTCCTTCGCAGACAGAACTCTGGCCTGGATCTCCCGCTGGGGGCAGAAGAAACTGATCTCAGCCCCCTT
CCTCTTTTACCCCCAGAGATTCTTTGAGGTGCTGCTCCTGTTCCAGGAGGGAGGGCTGAAGCTGGCGCTC
AATGGGCAGGGGCTGGGGGCCACCAGCATGAACCAGCAGGCCCTGGAGCAGCTGCGGGAGCTCCGGATCA
GTGGAAGTGTCCAGCTCTACTGTGTCCACTCCTGA

Translation (314 aa):
MSPGEKLDPIPDSFILQPPVFHPVVPYVTTIFGGLHAGKMVMLQGVVPLDAHRFQVDFQCGCSLCPRPDI
AFHFNPRFHTTKPHVICNTLHGGRWQREARWPHLALRRGSSFLILFLFGNEEVKVSVNGQHFLHFRYRLP
LSHVDTLGIFGDILVEAVGFLNINPFVEGSREYPAGHPFLLMSPRLEVPCSHALPQGLSPGQVIIVRGLV
LQEPKHFTVSLRDQAAHAPVTLRASFADRTLAWISRWGQKKLISAPFLFYPQRFFEVLLLFQEGGLKLAL
NGQGLGATSMNQQALEQLRELRISGSVQLYCVHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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