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Report for CCDS44438.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
44438.1 |
Public |
Homo sapiens |
10 |
SYNPO2L |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:79933](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:44438.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:79933](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 44438.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000394810.3 |
ENSP00000378289.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000394810.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000378289.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000394810](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000378289](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001114133.3 |
NP_001107605.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001114133.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001107605.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001114133](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001107605](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001107605.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001107605.1 |
977 |
Q9H987-1 |
977 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 44438.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2934 nt): ATGGGTGCTGAGGAGGAGGTGCTGGTCACACTATCAGGGGGAGCCCCCTGGGGCTTCCGACTTCATGGGG GGGCCGAGCAGAGGAAACCGTTACAGGTGTCTAAGATTCGAAGACGGAGCCAGGCTGGCAGAGCAGGACT CCGAGAGAGGGACCAGCTCTTGGCAATCAATGGGGTCTCTTGCACCAACCTCTCCCATGCCAGTGCCATG AGCCTCATCGATGCCTCAGGAAATCAGCTTGTCCTCACTGTGCAGCGGTTAGCAGACGAGGGTCCTGTGC AATCTCCATCTCCCCATGAGCTTCAGGTGCTGTCACCCTTATCTCCACTAAGTCCTGAGCCCCCTGGTGC TCCAGTTCCTCAGCCTCTTCAGCCTGGGAGCCTTCGTTCACCTCCTGATAGTGAGGCTTACTACGGAGAG ACTGACAGTGATGCTGATGGCCCTGCCACCCAGGAGAAGCCCCGTCGACCTCGCCGCCGAGGCCCCACAA GGCCCACCCCTCCGGGTGCCCCACCTGATGAGGTCTACCTGTCTGACAGCCCTGCAGAGCCAGCACCTAC TATCCCTGGCCCTCCCAGCCAGGGTGACAGCCGTGTGAGCTCCCCGTCTTGGGAGGATGGGGCAGCCCTT CAGCCACCCCCAGCTGAGGCTCTGCTGTTACCCCATGGCCCCCTCCGACCTGGTCCTCATCTCATCCCTA TGGTGGGGCCTGTTCCCCACCCAGTGGCAGAAGATCTTACTACCACCTACACCCAGAAGGCCAAGCAAGC CAAACTGCAACGTGCAGAGAGCCTCCAAGAGAAGAGCATAAAAGAGGCCAAGACCAAATGCAGGACAATT GCATCCCTGCTCACTGCAGCCCCCAACCCCCACTCCAAAGGGGTACTTATGTTTAAGAAACGGCGGCAGA GAGCCAAGAAGTACACCCTGGTGAGCTTCGGGGCTGCTGCTGGGACAGGCGCTGAGGAGGAGGACGGCGT TCCCCCCACGAGTGAGTCCGAGCTGGACGAAGAAGCCTTCTCTGACGCCCGCAGCCTCACCAATCAATCT GACTGGGACAGTCCCTATCTGGACATGGAGCTTGCCAGGGCGGGCTCAAGAGCATCAGAGGGCCAGGGCT CTGGGCTGGGAGGGCAGCTGAGTGAGGTCTCTGGGCGAGGGGTGCAGCTCTTTGAACAGCAGCGCCAGCG CGCAGACTCCAGCACCCAGGAACTGGCACGGGTCGAACCAGCAGCCATGCTCAACGGGGAAGGCCTGCAG TCACCACCTCGGGCCCAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACCCAGCCCCTTGCCGGCGCCTG TAGCCAGCCCCAGACCCTTCCAACCAGGTGGTGGAGCCCCGACCCCAGCTCCAAGCATCTTTAACCGGTC AGCCAGGCCCTTTACCCCGGGCCTACAAGGGCAGCGGCCAACTACCACCTCGGTTATTTTCCGGCCTTTA GCCCCCAAAAGGGCGAACGACAGCCTGGGGGGCCTCAGCCCCGCCCCACCCCCCTTCTTGTCTTCGCAGG GGCCCACCCCTCTGCCCAGCTTCACTTCAGGGGTTCCCAGCCACGCGCCAGTCTCTGGTTCCCCCAGCAC CCCACGCTCCTCGGGCCCTGTGACAGCCACCAGCTCCCTGTACATCCCAGCCCCTAGTCGGCCTGTCACC CCAGGTGGAGCTCCAGAGCCCCCCGCTCCTCCTAGCGCAGCTGCCATGACCTCCACCGCTTCTATCTTCC TATCTGCGCCTTTGCGACCCTCTGCGCGCCCAGAGGCGCCTGCCCCAGGCCCAGGGGCTCCTGAGCCCCC CAGCGCTCGCGAGCAGCGCATCTCTGTGCCAGCTGCCCGCACGGGTATCCTGCAGGAGGCCCGGCGCCGG GGGACCCGGAAGCAGATGTTCCGGCCGGGAAAGGAGGAGACGAAGAACTCGCCCAACCCCGAGCTGCTAT CGCTGGTACAGAACCTGGATGAAAAGCCTCGGGCCGGGGGTGCAGAATCTGGTCCTGAAGAAGATGCTCT GAGCCTCGGGGCTGAAGCCTGCAACTTCATGCAGCCAGTAGGGGCCAGGAGTTACAAGACCCTGCCTCAC GTGACACCTAAGACCCCCCCTCCAATGGCTCCCAAGACCCCGCCCCCTATGACTCCTAAGACTCCACCCC CAGTGGCTCCTAAGCCCCCATCTCGAGGGCTCCTTGATGGGCTCGTGAATGGGGCAGCCTCTTCGGCTGG AATCCCTGAGCCACCAAGGCTGCAGGGCAGGGGTGGGGAGCTGTTTGCTAAGCGGCAGAGCCGTGCGGAC AGGTATGTGGTGGAAGGTACACCTGGTCCTGGTCTTGGCCCTCGGCCTAGAAGTCCTTCTCCTACCCCGT CTCTGCCCCCTTCCTGGAAATATTCACCCAACATCCGTGCCCCGCCTCCTATTGCTTACAACCCACTGCT CTCTCCCTTTTTCCCCCAGGCGGCCCGAACTCTCCCTAAGGCCCAATCCCAGGGGCCTCGGGCAACACCC AAGCAGGGCATCAAGGCTCTAGATTTTATGCGGCATCAGCCCTATCAACTTAAAACTGCCATGTTCTGTT TTGATGAGGTTCCCCCGACTCCTGGCCCTATCGCCTCAGGGTCCCCCAAAACTGCCCGAGTCCAGGAGAT TCGCCGGTTTTCCACTCCGGCACCCCAGCCCACTGCAGAACCCCTGGCTCCCACTGTGCTTGCCCCCCGA GCAGCCACTACACTGGATGAGCCCATCTGGAGAACAGAACTGGCCTCAGCCCCTGTTCCTAGCCCAGCCC CTCCTCCAGAGGCTCCCAGGGGCCTTGGGGCTTCTCCCAGCTCCTGCGGTTTCCAGGTAGCCAGGCCCCG ATTTTCAGCCACCAGAACAGGATTGCAAGCTCATGTGTGGAGGCCTGGGGCAGGGCACCAGTGA
Translation (977 aa): MGAEEEVLVTLSGGAPWGFRLHGGAEQRKPLQVSKIRRRSQAGRAGLRERDQLLAINGVSCTNLSHASAM SLIDASGNQLVLTVQRLADEGPVQSPSPHELQVLSPLSPLSPEPPGAPVPQPLQPGSLRSPPDSEAYYGE TDSDADGPATQEKPRRPRRRGPTRPTPPGAPPDEVYLSDSPAEPAPTIPGPPSQGDSRVSSPSWEDGAAL QPPPAEALLLPHGPLRPGPHLIPMVGPVPHPVAEDLTTTYTQKAKQAKLQRAESLQEKSIKEAKTKCRTI ASLLTAAPNPHSKGVLMFKKRRQRAKKYTLVSFGAAAGTGAEEEDGVPPTSESELDEEAFSDARSLTNQS DWDSPYLDMELARAGSRASEGQGSGLGGQLSEVSGRGVQLFEQQRQRADSSTQELARVEPAAMLNGEGLQ SPPRAQSAPPEAAVLPPSPLPAPVASPRPFQPGGGAPTPAPSIFNRSARPFTPGLQGQRPTTTSVIFRPL APKRANDSLGGLSPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVT PGGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPGAPEPPSAREQRISVPAARTGILQEARRR GTRKQMFRPGKEETKNSPNPELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPVGARSYKTLPH VTPKTPPPMAPKTPPPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGIPEPPRLQGRGGELFAKRQSRAD RYVVEGTPGPGLGPRPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPKAQSQGPRATP KQGIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARVQEIRRFSTPAPQPTAEPLAPTVLAPR AATTLDEPIWRTELASAPVPSPAPPPEAPRGLGASPSSCGFQVARPRFSATRTGLQAHVWRPGAGHQ
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