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Report for CCDS688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
688.1 Public Homo sapiens 1 IFI44 24 110 108 CCDS HistoryNCBI Gene:10561Re-query CCDS DB by CCDS ID:688.1Re-query CCDS DB by GeneID:10561See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 688.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370747.9 ENSP00000359783.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370747.9Link to Ensembl Protein Viewer:ENSP00000359783.4Re-query CCDS DB by Nucleotide ID:ENST00000370747Re-query CCDS DB by Protein ID:ENSP00000359783
Original member Current member NCBI NM_006417.5 NP_006408.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006417.5Link to Protein Sequence:NP_006408.3Re-query CCDS DB by Nucleotide ID:NM_006417Re-query CCDS DB by Protein ID:NP_006408Link to BLAST:NP_006408.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006408.3 444 Q8TCB0-1 444 100% 0 0

Chromosomal Locations for CCDS 688.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78650196 78650652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78654243 78654279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78655014 78655209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78655362 78655511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78659312 78659483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78660554 78660654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78662704 78662878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78663765 78663811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGCAGTGACAACTCGTTTGACATGGTTGCACGAAAAGATCCTGCAAAATCATTTTGGAGGGAAGCGGC
TTAGCCTTCTCTATAAGGGTAGTGTCCATGGATTCCGTAATGGAGTTTTGCTTGACAGATGTTGTAATCA
AGGGCCTACTCTAACAGTGATTTATAGTGAAGATCATATTATTGGAGCATATGCAGAAGAGAGTTACCAG
GAAGGAAAGTATGCTTCCATCATCCTTTTTGCACTTCAAGATACTAAAATTTCAGAATGGAAACTAGGAC
TATGTACACCAGAAACACTGTTTTGTTGTGATGTTACAAAATATAACTCCCCAACTAATTTCCAGATAGA
TGGAAGAAATAGAAAAGTGATTATGGACTTAAAGACAATGGAAAATCTTGGACTTGCTCAAAATTGTACT
ATCTCTATTCAGGATTATGAAGTTTTTCGATGCGAAGATTCACTGGATGAAAGAAAGATAAAAGGGGTCA
TTGAGCTCAGGAAGAGCTTACTGTCTGCCTTGAGAACTTATGAACCATATGGATCCCTGGTTCAACAAAT
ACGAATTCTGCTGCTGGGTCCAATTGGAGCTGGGAAGTCCAGCTTTTTCAACTCAGTGAGGTCTGTTTTC
CAAGGGCATGTAACGCATCAGGCTTTGGTGGGCACTAATACAACTGGGATATCTGAGAAGTATAGGACAT
ACTCTATTAGAGACGGGAAAGATGGCAAATACCTGCCGTTTATTCTGTGTGACTCACTGGGGCTGAGTGA
GAAAGAAGGCGGCCTGTGCAGGGATGACATATTCTATATCTTGAACGGTAACATTCGTGATAGATACCAG
TTTAATCCCATGGAATCAATCAAATTAAATCATCATGACTACATTGATTCCCCATCGCTGAAGGACAGAA
TTCATTGTGTGGCATTTGTATTTGATGCCAGCTCTATTCAATACTTCTCCTCTCAGATGATAGTAAAGAT
CAAAAGAATTCGAAGGGAGTTGGTAAACGCTGGTGTGGTACATGTGGCTTTGCTCACTCATGTGGATAGC
ATGGATTTGATTACAAAAGGTGACCTTATAGAAATAGAGAGATGTGAGCCTGTGAGGTCCAAGCTAGAGG
AAGTCCAAAGAAAACTTGGATTTGCTCTTTCTGACATCTCGGTGGTTAGCAATTATTCCTCTGAGTGGGA
GCTGGACCCTGTAAAGGATGTTCTAATTCTTTCTGCTCTGAGACGAATGCTATGGGCTGCAGATGACTTC
TTAGAGGATTTGCCTTTTGAGCAAATAGGGAATCTAAGGGAGGAAATTATCAACTGTGCACAAGGAAAAA
AATAG

Translation (444 aa):
MAVTTRLTWLHEKILQNHFGGKRLSLLYKGSVHGFRNGVLLDRCCNQGPTLTVIYSEDHIIGAYAEESYQ
EGKYASIILFALQDTKISEWKLGLCTPETLFCCDVTKYNSPTNFQIDGRNRKVIMDLKTMENLGLAQNCT
ISIQDYEVFRCEDSLDERKIKGVIELRKSLLSALRTYEPYGSLVQQIRILLLGPIGAGKSSFFNSVRSVF
QGHVTHQALVGTNTTGISEKYRTYSIRDGKDGKYLPFILCDSLGLSEKEGGLCRDDIFYILNGNIRDRYQ
FNPMESIKLNHHDYIDSPSLKDRIHCVAFVFDASSIQYFSSQMIVKIKRIRRELVNAGVVHVALLTHVDS
MDLITKGDLIEIERCEPVRSKLEEVQRKLGFALSDISVVSNYSSEWELDPVKDVLILSALRRMLWAADDF
LEDLPFEQIGNLREEIINCAQGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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