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Report for CCDS40443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40443.1 Public Mus musculus 8 Dok4 23 108 98 CCDS HistoryNCBI Gene:114255Re-query CCDS DB by CCDS ID:40443.1Re-query CCDS DB by GeneID:114255See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046461.8 ENSMUSP00000043554.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046461.8Link to Ensembl Protein Viewer:ENSMUSP00000043554.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046461Re-query CCDS DB by Protein ID:ENSMUSP00000043554
Original member Current member EBI ENSMUST00000212810.1 ENSMUSP00000148355.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212810.1Link to Ensembl Protein Viewer:ENSMUSP00000148355.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212810Re-query CCDS DB by Protein ID:ENSMUSP00000148355
Original member Current member NCBI NM_053246.3 NP_444476.1 Accepted alive Link to Nucleotide Sequence:NM_053246.3Link to Protein Sequence:NP_444476.1Re-query CCDS DB by Nucleotide ID:NM_053246Re-query CCDS DB by Protein ID:NP_444476Link to BLAST:NP_444476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444476.1 325 Q99KE3 325 100% 0 0

Chromosomal Locations for CCDS 40443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94865129 94865247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94865342 94865462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94865621 94865759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94866457 94866646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94866748 94866867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94867128 94867242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94867392 94867499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94870860 94870925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGGCGACCAATTTCAACGACATCGTCAAGCAAGGCTATGTGAAGATGAAGAGCAGGAAGCTCGGGATTT
ACCGGAGGTGCTGGCTGGTGTTCCGGAAATCTTCCAGCAAGGGGCCCCAGCGGCTGGAGAAGTATCCTGA
TGAGAAGTCCGTGTGCCTCCGAGGCTGCCCCAAGGTGACTGAGATTAGCAACGTCAAGTGTGTCACACGG
CTCCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCATATTCACAGACGACTCCGCTCGCACCTTCACTT
GTGACTCAGAGCTGGAGGCAGAAGAGTGGTACAAGACACTGTCCGTGGAATGTCTGGGATCACGGCTCAA
TGACATCAGCCTGGGAGAGCCTGACCTCCTGGCTCCAGGAGTACAGTGTGAGCAGACAGATCGCTTCAAC
GTCTTCCTGTTACCCTGCCCCAACCTGGACGTGTATGGGGAGTGCAAGCTGCAGATCACTCACGAGAACA
TCTACCTCTGGGACATACACAACCCCCGCGTGAAGCTCGTCTCGTGGCCCCTCTGCTCTTTGCGCCGTTA
TGGCCGAGATGCTACGCGCTTTACCTTTGAGGCGGGCAGGATGTGTGACGCTGGGGAAGGGCTCTATACC
TTTCAGACACAGGAGGGGGAGCAGATTTACCAGCGGGTTCACAGTGCCACCCTGGCCATCGCCGAGCAGC
ACAAGCGGGTCCTGCTGGAGATGGAGAAGAATGTGAGGCTGCTGAACAAGGGCACCGAGCACTACTCCTA
TCCCTGCACACCCACGGCCATGCTGCCCCGCAGCGCGTACTGGCACCATATCACAGGTTCTCAGAACATT
GCTGAAGCCTCCAGCTATGGGGAAAGTTATGGGGCAGCCCAGGCCAGCTCGGAAACAGACCTCCTGAACA
GGTTCATCTTGCTTAAGCCAAAGCCCAGTCAGGAGGATAGCAGTGAGGCCAAGACCCCTGCCCAGTGA

Translation (325 aa):
MATNFNDIVKQGYVKMKSRKLGIYRRCWLVFRKSSSKGPQRLEKYPDEKSVCLRGCPKVTEISNVKCVTR
LPKETKRQAVAIIFTDDSARTFTCDSELEAEEWYKTLSVECLGSRLNDISLGEPDLLAPGVQCEQTDRFN
VFLLPCPNLDVYGECKLQITHENIYLWDIHNPRVKLVSWPLCSLRRYGRDATRFTFEAGRMCDAGEGLYT
FQTQEGEQIYQRVHSATLAIAEQHKRVLLEMEKNVRLLNKGTEHYSYPCTPTAMLPRSAYWHHITGSQNI
AEASSYGESYGAAQASSETDLLNRFILLKPKPSQEDSSEAKTPAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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