NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, July 23, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3943.1 Public Homo sapiens 5 NIM1K 24 110 108 CCDS HistoryNCBI Gene:167359Re-query CCDS DB by CCDS ID:3943.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326035.6 ENSP00000313572.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326035.6Link to Ensembl Protein Viewer:ENSP00000313572.2Re-query CCDS DB by Nucleotide ID:ENST00000326035Re-query CCDS DB by Protein ID:ENSP00000313572
Original member Current member EBI ENST00000512796.1 ENSP00000420849.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512796.1Link to Ensembl Protein Viewer:ENSP00000420849.1Re-query CCDS DB by Nucleotide ID:ENST00000512796Re-query CCDS DB by Protein ID:ENSP00000420849
Original member Current member NCBI NM_153361.4 NP_699192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153361.4Link to Protein Sequence:NP_699192.1Re-query CCDS DB by Nucleotide ID:NM_153361Re-query CCDS DB by Protein ID:NP_699192Link to BLAST:NP_699192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699192.1 436 Q8IY84 436 100% 0 0

Chromosomal Locations for CCDS 3943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43245776 43246067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43277057 43277325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43279980 43280729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGACTGCAGTGTATATGAATGGAGGTGGCCTGGTGAACCCCCACTATGCCCGGTGGGATCGGCGCGACA
GTGTAGAAAGTGGCTGTCAGACCGAGAGTAGCAAGGAGGGTGAGGAGGGACAGCCCCGCCAGCTGACGCC
CTTCGAGAAACTGACACAGGACATGTCCCAGGATGAGAAGGTGGTGAGGGAGATCACGCTGGGGAAACGG
ATAGGCTTCTACCGAATTCGAGGGGAAATCGGAAGTGGAAACTTCTCCCAAGTGAAGCTTGGGATTCACT
CCCTAACCAAAGAAAAGGTGGCCATTAAGATCCTGGACAAGACCAAGTTAGACCAGAAAACCCAGAGGCT
ACTATCCCGAGAAATCTCCAGCATGGAAAAGCTGCACCATCCCAACATCATCCGCCTTTACGAAGTGGTG
GAGACCCTATCCAAGCTGCACTTGGTGATGGAGTATGCAGGGGGTGGGGAGCTCTTCGGAAAAATTAGCA
CTGAGGGGAAGCTCTCTGAACCAGAAAGCAAGCTCATCTTCTCCCAGATTGTGTCTGCCGTGAAGCACAT
GCATGAAAACCAAATTATTCATAGAGATCTGAAAGCAGAAAATGTATTCTATACCAGTAATACTTGTGTG
AAGGTGGGCGATTTTGGATTCAGCACAGTAAGCAAAAAAGGTGAAATGCTGAACACTTTCTGTGGGTCTC
CTCCCTACGCTGCGCCTGAACTCTTCCGGGACGAGCACTACATCGGCATTTACGTGGATATCTGGGCCTT
GGGGGTGCTTTTGTACTTCATGGTGACTGGCACCATGCCATTTCGGGCAGAAACCGTGGCCAAACTAAAA
AAGAGCATCCTCGAGGGCACATACAGTGTACCGCCGCACGTGTCAGAGCCCTGCCACCGACTCATCCGAG
GAGTCCTTCAGCAGATCCCCACGGAGAGGTACGGAATCGACTGCATCATGAATGATGAATGGATGCAAGG
GGTGCCATACCCTACACCTTTGGAACCTTTCCAACTGGATCCCAAACATTTGTCGGAAACCAGCACTCTC
AAGGAAGAAGAAAATGAGGTCAAAAGCACTTTAGAACATTTGGGCATTACAGAAGAGCATATTCGAAATA
ACCAAGGGAGAGATGCTCGCAGCTCAATCACAGGGGTCTATAGAATTATTTTACATAGAGTCCAAAGGAA
GAAGGCTTTGGAAAGTGTCCCAGTCATGATGCTACCAGACCCTAAAGAAAGAGACCTCAAAAAAGGGTCC
CGTGTCTACAGAGGGATAAGACACACATCCAAATTTTGCTCGATTTTATAA

Translation (436 aa):
MTAVYMNGGGLVNPHYARWDRRDSVESGCQTESSKEGEEGQPRQLTPFEKLTQDMSQDEKVVREITLGKR
IGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVV
ETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSNTCV
KVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYIGIYVDIWALGVLLYFMVTGTMPFRAETVAKLK
KSILEGTYSVPPHVSEPCHRLIRGVLQQIPTERYGIDCIMNDEWMQGVPYPTPLEPFQLDPKHLSETSTL
KEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQRKKALESVPVMMLPDPKERDLKKGS
RVYRGIRHTSKFCSIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH