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Report for CCDS4088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4088.1 Public Homo sapiens 5 LIX1 24 110 108 CCDS HistoryNCBI Gene:167410Re-query CCDS DB by CCDS ID:4088.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4088.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274382.9 ENSP00000274382.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274382.9Link to Ensembl Protein Viewer:ENSP00000274382.4Re-query CCDS DB by Nucleotide ID:ENST00000274382Re-query CCDS DB by Protein ID:ENSP00000274382
Original member Current member NCBI NM_153234.5 NP_694966.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153234.5Link to Protein Sequence:NP_694966.3Re-query CCDS DB by Nucleotide ID:NM_153234Re-query CCDS DB by Protein ID:NP_694966Link to BLAST:NP_694966.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694966.3 282 Q8N485 282 100% 0 0

Chromosomal Locations for CCDS 4088.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 97094748 97095035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97096810 97096887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97105190 97105285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97107360 97107500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97124466 97124629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97142495 97142576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGGACAGAACCTTGGAATCTCTGAGACACATCATTGCCCAAGTCTTGCCTCACAGAGATCCGGCTCTAG
TCTTCAAAGACTTGAACGTTGTGTCAATGTTACAGGAATTTTGGGAAAGCAAGCAGCAGCAGAAGGCTGC
ATTCCCAAGTGAAGGTGTGGTGGTCTATGAGTCACTGCCAGCTCCTGGGCCTCCCTTTGTGAGTTACGTG
ACCCTCCCAGGGGGAAGCTGTTTTGGCAACTTTCAGTGCTGCTTAAGTAGAGCCGAGGCCAGGCGGGATG
CAGCTAAAGTGGCCCTGATCAACTCCCTCTTCAATGAGCTGCCCTCTCGCAGGATCACCAAGGAATTCAT
TATGGAAAGTGTTCAGGAAGCAGTAGCCTCCACCAGCGGCACCTTAGATGATGCAGATGACCCCAGCACC
AGTGTTGGGGCCTATCACTACATGCTGGAGTCAAACATGGGGAAGACTATGCTGGAGTTTCAGGAGCTGA
TGACCATTTTCCAACTATTGCACTGGAATGGAAGCCTAAAAGCCCTTCGTGAAACAAAGTGTTCCCGACA
GGAAGTCATCTCCTACTATTCTCAGTATTCTCTAGATGAAAAGATGCGCAGCCACATGGCCCTGGACTGG
ATCATGAAGGAGCGGGACTCACCAGGAATTGTCTCTCAAGAGCTACGAATGGCCCTGAGGCAGTTGGAGG
AAGCCAGGAAAGCAGGACAAGAACTACGGTTTTACAAAGAAAAGAAAGAAATATTGAGCTTAGCCCTGAC
TCAGATCTGCAGTGACCCTGACACTTCCTCACCCAGTGATGATCAGCTGAGCCTTACGGCCCTGTGTGGC
TATCACTAG

Translation (282 aa):
MDRTLESLRHIIAQVLPHRDPALVFKDLNVVSMLQEFWESKQQQKAAFPSEGVVVYESLPAPGPPFVSYV
TLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPST
SVGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDW
IMKERDSPGIVSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQICSDPDTSSPSDDQLSLTALCG
YH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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