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Report for CCDS82436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82436.1 Public Homo sapiens 2 ATL2 24 110 108 CCDS HistoryNCBI Gene:64225Re-query CCDS DB by CCDS ID:82436.1Re-query CCDS DB by GeneID:64225See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406122.5 ENSP00000385446.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406122.5Link to Ensembl Protein Viewer:ENSP00000385446.1Re-query CCDS DB by Nucleotide ID:ENST00000406122Re-query CCDS DB by Protein ID:ENSP00000385446
Original member Current member EBI ENST00000629272.2 ENSP00000486809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000629272.2Link to Ensembl Protein Viewer:ENSP00000486809.1Re-query CCDS DB by Nucleotide ID:ENST00000629272Re-query CCDS DB by Protein ID:ENSP00000486809
Original member Current member NCBI NM_001330460.1 NP_001317389.1 Accepted alive Link to Nucleotide Sequence:NM_001330460.1Link to Protein Sequence:NP_001317389.1Re-query CCDS DB by Nucleotide ID:NM_001330460Re-query CCDS DB by Protein ID:NP_001317389Link to BLAST:NP_001317389.1
Original member Current member NCBI NM_001330461.2 NP_001317390.1 Accepted alive Link to Nucleotide Sequence:NM_001330461.2Link to Protein Sequence:NP_001317390.1Re-query CCDS DB by Nucleotide ID:NM_001330461Re-query CCDS DB by Protein ID:NP_001317390Link to BLAST:NP_001317390.1

Chromosomal Locations for CCDS 82436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 38296483 38296590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38296686 38296700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38298144 38298575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38299256 38299327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38300272 38300328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38309379 38309506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38310309 38310447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38313151 38313243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38314608 38314664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38315284 38315334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38318535 38318624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACTATCAAAGACTGTGCAACGGTGTTTGCTCTGAGCA
CTATGACTAGCTCTGTCCAGGTATATAATCTGTCTCAGAATATTCAAGAAGATGATCTTCAACATTTGCA
ATTATTTACAGAGTATGGAAGACTTGCGATGGAAGAAATCTACCAGAAACCATTTCAGACATTAATGTTT
TTGATTCGAGATTGGAGCTATCCTTATGAACATTCATATGGTTTGGAAGGTGGAAAGCAATTTCTTGAAA
AGAGATTACAGGTAAAACAAAATCAACATGAAGAGCTTCAGAATGTAAGGAAGCACATACACAATTGTTT
CTCAAATCTTGGTTGCTTCCTTTTGCCACATCCTGGTCTTAAAGTTGCAACTAATCCTAGTTTTGATGGG
AGATTGAAAGATATTGATGAAGACTTTAAACGAGAGCTTCGAAATCTGGTTCCATTGCTGCTTGCCCCTG
AAAATTTGGTAGAAAAAGAGATAAGTGGATCTAAAGTCACTTGTAGAGATCTTGTAGAATATTTTAAGGC
TTACATCAAAATCTATCAAGGAGAAGAACTTCCACATCCAAAGTCCATGCTTCAGGCAACAGCTGAAGCT
AATAATCTTGCTGCAGTAGCAGGAGCAAGAGATACCTATTGTAAAAGTATGGAACAGGTATGTGGAGGGG
ACAAGCCTTACATTGCACCTTCAGATCTGGAGCGAAAACACTTGGATCTCAAGGAAGTGGCGATAAAACA
ATTTCGTTCAGTAAAAAAGATGGGTGGAGATGAGTTCTGCCGTCGTTATCAGGACCAGCTTGAAGCTGAA
ATTGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAATATCTTCTATGCTGCTCGTACCC
CAGCCACACTGTTTGCGGTCATGTTTGCTATGTATATAATCTCAGGACTGACTGGCTTCATTGGCCTAAA
CTCTATAGCTGTCTTGTGTAACCTTGTCATGGGGTTAGCACTGATATTTCTTTGTACTTGGGCATATGTT
AAATACTCTGGGGAGTTCAGAGAAATTGGAACAGTGATTGATCAGATTGCTGAAACACTATGGGAACAGA
GGAGTCCCAGGAAGGTGTTTTCCAAACTGTTTGAAGTTACTAGACGTCGAATGGTTCACCGTGCTCTTTC
ATCAGCACAGCGACAGAGACTGTCATCCAACAATAACAAGAAGAAAAATTAG

Translation (413 aa):
MDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQLFTEYGRLAMEEIYQKPFQTLMF
LIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEELQNVRKHIHNCFSNLGCFLLPHPGLKVATNPSFDG
RLKDIDEDFKRELRNLVPLLLAPENLVEKEISGSKVTCRDLVEYFKAYIKIYQGEELPHPKSMLQATAEA
NNLAAVAGARDTYCKSMEQVCGGDKPYIAPSDLERKHLDLKEVAIKQFRSVKKMGGDEFCRRYQDQLEAE
IEETYANFIKHNDGKNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYV
KYSGEFREIGTVIDQIAETLWEQRSPRKVFSKLFEVTRRRMVHRALSSAQRQRLSSNNNKKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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