NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2894.1 Public Homo sapiens 3 FHIT 24 110 108 CCDS HistoryNCBI Gene:2272Re-query CCDS DB by CCDS ID:2894.1Re-query CCDS DB by GeneID:2272See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2894.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000468189.5 ENSP00000417480.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468189.5Link to Ensembl Protein Viewer:ENSP00000417480.1Re-query CCDS DB by Nucleotide ID:ENST00000468189Re-query CCDS DB by Protein ID:ENSP00000417480
Original member Current member EBI ENST00000476844.5 ENSP00000417557.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476844.5Link to Ensembl Protein Viewer:ENSP00000417557.1Re-query CCDS DB by Nucleotide ID:ENST00000476844Re-query CCDS DB by Protein ID:ENSP00000417557
Original member Current member EBI ENST00000492590.6 ENSP00000418582.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000492590.6Link to Ensembl Protein Viewer:ENSP00000418582.1Re-query CCDS DB by Nucleotide ID:ENST00000492590Re-query CCDS DB by Protein ID:ENSP00000418582
Original member Current member NCBI NM_001166243.3 NP_001159715.1 Accepted alive Link to Nucleotide Sequence:NM_001166243.3Link to Protein Sequence:NP_001159715.1Re-query CCDS DB by Nucleotide ID:NM_001166243Re-query CCDS DB by Protein ID:NP_001159715Link to BLAST:NP_001159715.1
Original member Current member NCBI NM_001320899.2 NP_001307828.1 Accepted alive Link to Nucleotide Sequence:NM_001320899.2Link to Protein Sequence:NP_001307828.1Re-query CCDS DB by Nucleotide ID:NM_001320899Re-query CCDS DB by Protein ID:NP_001307828Link to BLAST:NP_001307828.1
Original member Current member NCBI NM_001320900.2 NP_001307829.1 Accepted alive Link to Nucleotide Sequence:NM_001320900.2Link to Protein Sequence:NP_001307829.1Re-query CCDS DB by Nucleotide ID:NM_001320900Re-query CCDS DB by Protein ID:NP_001307829Link to BLAST:NP_001307829.1
Original member Current member NCBI NM_002012.4 NP_002003.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002012.4Link to Protein Sequence:NP_002003.1Re-query CCDS DB by Nucleotide ID:NM_002012Re-query CCDS DB by Protein ID:NP_002003Link to BLAST:NP_002003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159715.1 147 P49789 147 100% 0 0
NP_001307828.1 147 P49789 147 100% 0 0
NP_001307829.1 147 P49789 147 100% 0 0
NP_002003.1 147 P49789 147 100% 0 0

Chromosomal Locations for CCDS 2894.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 59752226 59752321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 59922346 59922414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60011371 60011400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60014007 60014152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60536860 60536962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGTCGTTCAGATTTGGCCAACATCTCATCAAGCCCTCTGTAGTGTTTCTCAAAACAGAACTGTCCTTCG
CTCTTGTGAATAGGAAACCTGTGGTACCAGGACATGTCCTTGTGTGCCCGCTGCGGCCAGTGGAGCGCTT
CCATGACCTGCGTCCTGATGAAGTGGCCGATTTGTTTCAGACGACCCAGAGAGTCGGGACAGTGGTGGAA
AAACATTTCCATGGGACCTCTCTCACCTTTTCCATGCAGGATGGCCCCGAAGCCGGACAGACTGTGAAGC
ACGTTCACGTCCATGTTCTTCCCAGGAAGGCTGGAGACTTTCACAGGAATGACAGCATCTATGAGGAGCT
CCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCAGAAGCCGCA
GCTCTGCGGGTCTACTTTCAGTGA

Translation (147 aa):
MSFRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVE
KHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKEDFPASWRSEEEMAAEAA
ALRVYFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH