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Report for CCDS42845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42845.1 Public Homo sapiens 20 RSPO4 24 110 108 CCDS HistoryNCBI Gene:343637Re-query CCDS DB by CCDS ID:42845.1Re-query CCDS DB by GeneID:343637See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400634.2 ENSP00000383475.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400634.2Link to Ensembl Protein Viewer:ENSP00000383475.2Re-query CCDS DB by Nucleotide ID:ENST00000400634Re-query CCDS DB by Protein ID:ENSP00000383475
Original member Current member NCBI NM_001040007.3 NP_001035096.1 Accepted alive Link to Nucleotide Sequence:NM_001040007.3Link to Protein Sequence:NP_001035096.1Re-query CCDS DB by Nucleotide ID:NM_001040007Re-query CCDS DB by Protein ID:NP_001035096Link to BLAST:NP_001035096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035096.1 172 Q2I0M5-2 172 100% 0 0

Chromosomal Locations for CCDS 42845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 960357 960466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 967174 967314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 967950 968138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1002086 1002164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCGGGCGCCACTCTGCCTGCTCCTGCTCGTCGCCCACGCCGTGGACATGCTCGCCCTGAACCGAAGGA
AGAAGCAAGTGGGCACTGGCCTGGGGGGCAACTGCACAGGCTGTATCATCTGCTCAGAGGAGAACGGCTG
TTCCACCTGCCAGCAGAGGCTCTTCCTGTTCATCCGCCGGGAAGGCATCCGCCAGTACGGCAAGTGCCTG
CACGACTGTCCCCCTGGGTACTTCGGCATCCGCGGCCAGGAGGTCAACAGGTGCAAAAAATGTGGGGCCA
CTTGTGAGAGCTGCTTCAGCCAGGACTTCTGCATCCGGTGCAAGAGGCAGTTTTACTTGTACAAGGGGAA
GTGTCTGCCCACCTGCCCGCCGGGCACTTTGGCCCACCAGAACACACGGGAGTGCCAGGAGAGGAGCCCC
GGCCAGAAGAAGGGCAGGAAGGACCGGCGCCCACGCAAGGACAGGAAGCTGGACCGCAGGCTGGACGTGA
GGCCGCGCCAGCCCGGCCTGCAGCCCTGA

Translation (172 aa):
MRAPLCLLLLVAHAVDMLALNRRKKQVGTGLGGNCTGCIICSEENGCSTCQQRLFLFIRREGIRQYGKCL
HDCPPGYFGIRGQEVNRCKKCGATCESCFSQDFCIRCKRQFYLYKGKCLPTCPPGTLAHQNTRECQERSP
GQKKGRKDRRPRKDRKLDRRLDVRPRQPGLQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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