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Report for CCDS34312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34312.1 Public Homo sapiens 5 RUFY1 24 110 108 CCDS HistoryNCBI Gene:80230Re-query CCDS DB by CCDS ID:34312.1Re-query CCDS DB by GeneID:80230See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393438.6 ENSP00000377087.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393438.6Link to Ensembl Protein Viewer:ENSP00000377087.2Re-query CCDS DB by Nucleotide ID:ENST00000393438Re-query CCDS DB by Protein ID:ENSP00000377087
Original member Current member EBI ENST00000437570.6 ENSP00000390025.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437570.6Link to Ensembl Protein Viewer:ENSP00000390025.2Re-query CCDS DB by Nucleotide ID:ENST00000437570Re-query CCDS DB by Protein ID:ENSP00000390025
Original member Current member NCBI NM_001040451.3 NP_001035541.1 Accepted alive Link to Nucleotide Sequence:NM_001040451.3Link to Protein Sequence:NP_001035541.1Re-query CCDS DB by Nucleotide ID:NM_001040451Re-query CCDS DB by Protein ID:NP_001035541Link to BLAST:NP_001035541.1
Original member Current member NCBI NM_001040452.3 NP_001035542.1 Accepted alive Link to Nucleotide Sequence:NM_001040452.3Link to Protein Sequence:NP_001035542.1Re-query CCDS DB by Nucleotide ID:NM_001040452Re-query CCDS DB by Protein ID:NP_001035542Link to BLAST:NP_001035542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035541.1 600 Q96T51-2 600 100% 0 0
NP_001035542.1 600 Q96T51-2 600 100% 0 0

Chromosomal Locations for CCDS 34312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 179560039 179560198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179562547 179562664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179567461 179567562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179569302 179569425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179577075 179577136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179580947 179581012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179585796 179585865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179589546 179589647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179591625 179591741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179593478 179593645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179594866 179594963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179596562 179596681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179598692 179598821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179601892 179601986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179605876 179605924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179607582 179607659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179609376 179609519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGATGGAGGAGCGTGCCAACCTGATGCACATGATGAAACTCAGCATCAAGGTGTTGCTCCAGTCGGCTC
TGAGCCTGGGCCGCAGCCTGGATGCGGACCATGCCCCCTTGCAGCAGTTCTTTGTAGTGATGGAGCACTG
CCTCAAACATGGGCTGAAAGTTAAGAAGAGTTTTATTGGCCAAAATAAATCATTCTTTGGTCCTTTGGAG
CTGGTGGAGAAACTTTGTCCAGAAGCATCAGATATAGCGACTAGTGTCAGAAATCTTCCAGAATTAAAGA
CAGCTGTGGGAAGAGGCCGAGCGTGGCTTTATCTTGCACTCATGCAAAAGAAACTGGCAGATTATCTGAA
AGTGCTTATAGACAATAAACATCTCTTAAGCGAGTTCTATGAGCCTGAGGCTTTAATGATGGAGGAAGAA
GGGATGGTGATTGTTGGTCTGCTGGTGGGACTCAATGTTCTCGATGCCAATCTCTGCTTGAAAGGAGAAG
ACTTGGATTCTCAGGTTGGAGTAATAGATTTTTCCCTCTACCTTAAGGATGTGCAGGATCTTGATGGTGG
CAAGGAGCATGAAAGAATTACTGATGTCCTTGATCAAAAAAATTATGTGGAAGAACTTAACCGGCACTTG
AGCTGCACAGTTGGGGATCTTCAAACCAAGATAGATGGCTTGGAAAAGACTAACTCAAAGCTTCAAGAAG
AGCTTTCAGCTGCAACAGACCGAATTTGCTCACTTCAAGAAGAACAGCAGCAGTTAAGAGAACAAAATGA
ATTAATTCGAGAAAGAAGTGAAAAGAGTGTAGAGATAACAAAACAGGATACCAAAGTTGAGCTGGAGACT
TACAAGCAAACTCGGCAAGGTCTGGATGAAATGTACAGTGATGTGTGGAAGCAGCTAAAAGAGGAGAAGA
AAGTCCGGTTGGAACTGGAAAAAGAACTGGAGTTACAAATTGGAATGAAAACCGAAATGGAAATTGCAAT
GAAGTTACTGGAAAAGGACACCCACGAGAAGCAGGACACACTAGTTGCCCTCCGCCAGCAGCTGGAAGAA
GTCAAAGCGATTAATTTACAGATGTTTCACAAAGCTCAGAATGCAGAGAGCAGTTTGCAGCAGAAGAATG
AAGCCATCACATCCTTTGAAGGAAAAACCAACCAAGTTATGTCCAGCATGAAACAAATGGAAGAAAGGTT
GCAGCACTCGGAGCGGGCGAGGCAGGGGGCTGAGGAGCGGAGCCACAAGCTGCAGCAGGAGCTGGGCGGG
AGGATCGGCGCCCTGCAGCTGCAGCTCTCCCAGCTGCACGAGCAATGCTCAAGCCTGGAGAAAGAATTGA
AATCAGAAAAAGAGCAAAGACAGGCTCTTCAGCGCGAATTACAGCACGAGAAAGACACTTCCTCTCTACT
CAGGATGGAGCTGCAACAAGTGGAAGGACTGAAAAAGGAGTTGCGGGAGCTTCAGGACGAGAAGGCAGAG
CTGCAGAAGATCTGCGAGGAGCAGGAACAAGCCCTCCAGGAAATGGGCCTGCACCTCAGCCAGTCCAAGC
TGAAGATGGAAGATATAAAAGAAGTGAACCAGGCACTGAAGGGCCACGCCTGGCTGAAAGATGACGAAGC
GACACACTGTAGGCAGTGTGAGAAGGAGTTCTCCATTTCCCGGAGAAAGCACCACTGCCGGAACTGTGGC
CACATCTTCTGCAACACCTGCTCCAGCAACGAGCTGGCCCTGCCCTCCTACCCCAAGCCGGTGCGAGTGT
GCGACAGCTGCCACACCCTGCTCCTGCAGCGCTGCTCCTCCACGGCCTCCTGA

Translation (600 aa):
MMEERANLMHMMKLSIKVLLQSALSLGRSLDADHAPLQQFFVVMEHCLKHGLKVKKSFIGQNKSFFGPLE
LVEKLCPEASDIATSVRNLPELKTAVGRGRAWLYLALMQKKLADYLKVLIDNKHLLSEFYEPEALMMEEE
GMVIVGLLVGLNVLDANLCLKGEDLDSQVGVIDFSLYLKDVQDLDGGKEHERITDVLDQKNYVEELNRHL
SCTVGDLQTKIDGLEKTNSKLQEELSAATDRICSLQEEQQQLREQNELIRERSEKSVEITKQDTKVELET
YKQTRQGLDEMYSDVWKQLKEEKKVRLELEKELELQIGMKTEMEIAMKLLEKDTHEKQDTLVALRQQLEE
VKAINLQMFHKAQNAESSLQQKNEAITSFEGKTNQVMSSMKQMEERLQHSERARQGAEERSHKLQQELGG
RIGALQLQLSQLHEQCSSLEKELKSEKEQRQALQRELQHEKDTSSLLRMELQQVEGLKKELRELQDEKAE
LQKICEEQEQALQEMGLHLSQSKLKMEDIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCG
HIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRCSSTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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