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Report for CCDS6700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6700.1 Public Homo sapiens 9 BICD2 24 110 108 CCDS HistoryNCBI Gene:23299Re-query CCDS DB by CCDS ID:6700.1Re-query CCDS DB by GeneID:23299See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375512.3 ENSP00000364662.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375512.3Link to Ensembl Protein Viewer:ENSP00000364662.3Re-query CCDS DB by Nucleotide ID:ENST00000375512Re-query CCDS DB by Protein ID:ENSP00000364662
Original member Current member NCBI NM_015250.4 NP_056065.1 Accepted alive Link to Nucleotide Sequence:NM_015250.4Link to Protein Sequence:NP_056065.1Re-query CCDS DB by Nucleotide ID:NM_015250Re-query CCDS DB by Protein ID:NP_056065Link to BLAST:NP_056065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056065.1 824 Q8TD16-1 824 100% 0 0

Chromosomal Locations for CCDS 6700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92713456 92713461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92715253 92715463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92717797 92717948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92718539 92719582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92720300 92720755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92722656 92722808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92729024 92729236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92764505 92764744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGTCGGCGCCGTCGGAGGAGGAGGAGTACGCGCGGCTGGTGATGGAGGCGCAGCCGGAGTGGCTGCGCG
CCGAGGTGAAGCGGCTGTCCCACGAGCTGGCCGAGACCACGCGTGAGAAGATCCAGGCGGCCGAGTACGG
GCTGGCGGTGCTCGAGGAGAAGCACCAGCTCAAGCTGCAGTTCGAGGAGCTCGAGGTGGACTATGAGGCT
ATCCGCAGCGAGATGGAGCAGCTCAAGGAGGCCTTTGGACAAGCACACACAAACCACAAGAAGGTGGCTG
CTGACGGAGAGAGCCGGGAGGAGAGCCTGATCCAGGAGTCGGCCTCCAAGGAGCAGTACTACGTGCGGAA
GGTGCTAGAGCTGCAGACGGAGCTGAAGCAGTTGCGCAATGTCCTCACCAACACGCAGTCGGAGAATGAG
CGCCTGGCCTCTGTGGCCCAGGAGCTGAAGGAGATCAACCAGAATGTGGAGATCCAGCGTGGCCGCCTGC
GGGATGACATCAAGGAGTACAAATTCCGGGAAGCTCGTCTGCTGCAGGACTACTCGGAACTGGAGGAGGA
GAACATCAGCCTGCAGAAGCAAGTGTCTGTGCTCAGACAGAACCAGGTGGAGTTTGAGGGCCTCAAGCAT
GAGATCAAGCGTCTGGAGGAGGAGACCGAGTACCTCAACAGCCAGCTGGAGGATGCCATCCGCCTCAAGG
AGATCTCAGAGCGGCAGCTGGAGGAGGCGCTGGAGACCCTGAAGACGGAGCGCGAACAGAAGAACAGCCT
GCGCAAGGAGCTGTCACACTACATGAGCATCAATGACTCCTTCTACACCAGCCACCTGCATGTCTCGCTG
GATGGCCTCAAGTTCAGTGACGATGCTGCCGAGCCCAACAACGATGCCGAGGCCCTGGTCAATGGCTTTG
AGCACGGCGGCCTGGCCAAGCTGCCACTGGACAACAAGACCTCCACGCCCAAGAAGGAGGGCCTCGCACC
GCCCTCCCCCAGCCTCGTCTCCGACCTACTCAGTGAGCTCAACATCTCTGAGATCCAGAAGCTGAAGCAG
CAGCTGATGCAGATGGAGCGGGAAAAGGCGGGCCTGCTGGCAACGCTGCAGGACACACAGAAGCAGCTGG
AGCACACGCGGGGCTCCCTGTCAGAACAGCAGGAGAAGGTGACCCGCCTCACAGAGAATCTGAGTGCCCT
GCGGCGCCTGCAGGCCAGCAAGGAGCGGCAGACAGCCCTGGACAACGAGAAGGACCGTGACAGCCATGAG
GATGGGGACTACTACGAGGTGGACATCAACGGGCCTGAGATCTTGGCCTGCAAGTACCATGTGGCTGTGG
CTGAGGCTGGCGAGCTCCGCGAGCAGCTCAAGGCACTGCGCAGCACGCACGAGGCTCGTGAGGCCCAGCA
CGCCGAGGAGAAGGGCCGCTATGAGGCTGAGGGCCAGGCACTCACGGAGAAGGTCTCCCTGCTAGAGAAG
GCCAGCCGCCAGGACCGCGAGCTGCTGGCCCGGCTGGAGAAGGAGCTAAAGAAGGTGAGCGACGTCGCCG
GCGAGACACAGGGCAGCCTGAGTGTGGCCCAGGATGAGCTGGTGACCTTCAGTGAGGAGCTGGCCAATCT
CTACCACCACGTGTGCATGTGCAACAATGAGACACCCAACCGTGTCATGCTGGACTACTACCGCGAGGGC
CAGGGCGGGGCCGGCCGCACCAGTCCCGGGGGCCGCACCAGCCCCGAGGCGCGTGGCCGGCGCTCACCCA
TCCTCCTACCCAAGGGGCTGCTGGCTCCTGAGGCGGGCCGAGCAGATGGTGGGACGGGGGACAGCAGCCC
CTCGCCTGGCTCCTCACTGCCATCACCCCTGAGTGACCCACGCCGGGAGCCCATGAACATCTACAACCTG
ATCGCTATCATCCGTGACCAGATCAAGCACCTGCAGGCAGCCGTGGACCGCACCACGGAGCTGTCACGCC
AGCGCATTGCCTCTCAGGAGCTGGGCCCCGCCGTGGACAAGGACAAGGAAGCGCTTATGGAGGAGATCCT
CAAGCTGAAGTCGCTGCTCAGCACCAAGCGGGAGCAGATCACCACGCTGCGCACTGTGCTCAAGGCCAAC
AAGCAGACGGCCGAGGTGGCCCTTGCCAACCTGAAGAGCAAGTATGAGAATGAGAAGGCCATGGTTACCG
AGACCATGATGAAGCTGCGCAATGAGCTCAAGGCCCTCAAGGAGGACGCAGCCACCTTCTCCTCGCTGCG
TGCTATGTTTGCCACCAGGTGTGACGAGTACATTACACAGCTGGATGAGATGCAGCGGCAGCTGGCGGCT
GCTGAGGACGAGAAGAAGACGCTGAACTCGCTGCTGCGCATGGCCATCCAGCAGAAGCTGGCGCTGACCC
AGCGGCTGGAGCTGCTCGAGCTGGACCATGAGCAGACCCGGCGTGGCCGTGCCAAAGCCGCCCCGAAGAC
CAAGCCAGCCACACCGAGCCTGTAG

Translation (824 aa):
MSAPSEEEEYARLVMEAQPEWLRAEVKRLSHELAETTREKIQAAEYGLAVLEEKHQLKLQFEELEVDYEA
IRSEMEQLKEAFGQAHTNHKKVAADGESREESLIQESASKEQYYVRKVLELQTELKQLRNVLTNTQSENE
RLASVAQELKEINQNVEIQRGRLRDDIKEYKFREARLLQDYSELEEENISLQKQVSVLRQNQVEFEGLKH
EIKRLEEETEYLNSQLEDAIRLKEISERQLEEALETLKTEREQKNSLRKELSHYMSINDSFYTSHLHVSL
DGLKFSDDAAEPNNDAEALVNGFEHGGLAKLPLDNKTSTPKKEGLAPPSPSLVSDLLSELNISEIQKLKQ
QLMQMEREKAGLLATLQDTQKQLEHTRGSLSEQQEKVTRLTENLSALRRLQASKERQTALDNEKDRDSHE
DGDYYEVDINGPEILACKYHVAVAEAGELREQLKALRSTHEAREAQHAEEKGRYEAEGQALTEKVSLLEK
ASRQDRELLARLEKELKKVSDVAGETQGSLSVAQDELVTFSEELANLYHHVCMCNNETPNRVMLDYYREG
QGGAGRTSPGGRTSPEARGRRSPILLPKGLLAPEAGRADGGTGDSSPSPGSSLPSPLSDPRREPMNIYNL
IAIIRDQIKHLQAAVDRTTELSRQRIASQELGPAVDKDKEALMEEILKLKSLLSTKREQITTLRTVLKAN
KQTAEVALANLKSKYENEKAMVTETMMKLRNELKALKEDAATFSSLRAMFATRCDEYITQLDEMQRQLAA
AEDEKKTLNSLLRMAIQQKLALTQRLELLELDHEQTRRGRAKAAPKTKPATPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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