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Report for CCDS13250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13250.1 Public Homo sapiens 20 EIF6 24 110 108 CCDS HistoryNCBI Gene:3692Re-query CCDS DB by CCDS ID:13250.1Re-query CCDS DB by GeneID:3692See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374443.7 ENSP00000363566.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374443.7Link to Ensembl Protein Viewer:ENSP00000363566.3Re-query CCDS DB by Nucleotide ID:ENST00000374443Re-query CCDS DB by Protein ID:ENSP00000363566
Original member Current member NCBI NM_181466.3 NP_852131.1 Accepted alive Link to Nucleotide Sequence:NM_181466.3Link to Protein Sequence:NP_852131.1Re-query CCDS DB by Nucleotide ID:NM_181466Re-query CCDS DB by Protein ID:NP_852131Link to BLAST:NP_852131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852131.1 226 P56537-2 226 100% 0 0

Chromosomal Locations for CCDS 13250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35279197 35279206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35279566 35279747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35279942 35280118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 35284176 35284487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCGGTCCGAGCTTCGTTCGAGAACAACTGTGAGATCGGCTGCTTTGCCAAGCTCACCAACACCTACT
GTCTGGTAGCGATCGGAGGCTCAGAGAACTTCTACAGGTGCGGCGGGAGCCCCGGGGCTTACGGTGGCGG
GGAGGCGTGCGCAGGAGTCAAGAGCTCCGGCAGTGGGAGGGTGCCGGCCCCTCTGCCCCGCCACCACCGA
GTCCATGTCCCTACAGTGTGTTCGAGGGCGAGCTCTCCGATACCATCCCCGTGGTGCACGCGTCTATCGC
CGGCTGCCGCATCATCGGGCGCATGTGTGTGGGAGACAGAAGAAATTCTGGCAGATGTGCTCAAGGTGGA
AGTCTTCAGACAGACAGTGGCCGACCAGGTGCTAGTAGGAAGCTACTGTGTCTTCAGCAATCAGGGAGGG
CTGGTGCATCCCAAGACTTCAATTGAAGACCAGGATGAGCTGTCCTCTCTTCTTCAAGTCCCCCTTGTGG
CGGGGACTGTGAACCGAGGCAGTGAGGTGATTGCTGCTGGGATGGTGGTGAATGACTGGTGTGCCTTCTG
TGGCCTGGACACAACCAGCACAGAGCTGTCAGTGGTGGAGAGTGTCTTCAAGCTGAATGAAGCCCAGCCT
AGCACCATTGCCACCAGCATGCGGGATTCCCTCATTGACAGCCTCACCTGA

Translation (226 aa):
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYRCGGSPGAYGGGEACAGVKSSGSGRVPAPLPRHHR
VHVPTVCSRASSPIPSPWCTRLSPAAASSGACVWETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGG
LVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQP
STIATSMRDSLIDSLT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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