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Report for CCDS42707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42707.1 Public Homo sapiens 2 CHMP3 24 110 108 CCDS HistoryNCBI Gene:51652Re-query CCDS DB by CCDS ID:42707.1Re-query CCDS DB by GeneID:51652See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409225.2 ENSP00000386590.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409225.2Link to Ensembl Protein Viewer:ENSP00000386590.2Re-query CCDS DB by Nucleotide ID:ENST00000409225Re-query CCDS DB by Protein ID:ENSP00000386590
Original member Current member NCBI NM_001005753.3 NP_001005753.1 Accepted alive Link to Nucleotide Sequence:NM_001005753.3Link to Protein Sequence:NP_001005753.1Re-query CCDS DB by Nucleotide ID:NM_001005753Re-query CCDS DB by Protein ID:NP_001005753Link to BLAST:NP_001005753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005753.1 156 Q9Y3E7-2 156 100% 0 0

Chromosomal Locations for CCDS 42707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86505804 86505949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86507479 86507593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86510358 86510479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 86529218 86529305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGATCAGGTCAAGGAAGGCTGTGAGCAAGCTGTATGCATCCAAAGCACACATGAACTCAGTGCTCATGG
GG
ATGAAGAACCAGCTCGCGGTCTTGCGAGTGGCTGGTTCCCTGCAGAAGAGCACAGAAGTGATGAAGGC
C
ATGCAAAGTCTTGTGAAGATTCCAGAGATTCAGGCCACCATGAGGGAGTTGTCCAAAGAAATGATGAAG
GCT
GGGATCATAGAGGAGATGTTAGAGGACACTTTTGAAAGCATGGACGATCAGGAAGAAATGGAGGAAG
AA
GCAGAAATGGAAATTGACAGAATTCTCTTTGAAATTACAGCAGGGGCCTTGGGCAAAGCACCCAGTAA
A
GTGACTGATGCCCTTCCAGAGCCAGAACCTCCAGGAGCGATGGCTGCCTCAGAGGATGAGGAGGAGGAG
GAA
GAGGCTCTGGAGGCCATGCAGTCCCGGCTGGCCACACTCCGCAGCTAG


Translation (156 aa):
MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK
A
GIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA
GALGKAPSKVTDALPEPEPPGAMAASEDEEEE
E
EALEAMQSRLATLRS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser