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Report for CCDS59528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59528.1 Public Homo sapiens X TRO 24 110 108 CCDS HistoryNCBI Gene:7216Re-query CCDS DB by CCDS ID:59528.1Re-query CCDS DB by GeneID:7216See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59528.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375041.6 ENSP00000364181.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375041.6Link to Ensembl Protein Viewer:ENSP00000364181.2Re-query CCDS DB by Nucleotide ID:ENST00000375041Re-query CCDS DB by Protein ID:ENSP00000364181
Original member Current member NCBI NM_001271184.2 NP_001258113.1 Accepted alive Link to Nucleotide Sequence:NM_001271184.2Link to Protein Sequence:NP_001258113.1Re-query CCDS DB by Nucleotide ID:NM_001271184Re-query CCDS DB by Protein ID:NP_001258113Link to BLAST:NP_001258113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258113.1 1034 Q12816-4 1034 100% 0 0

Chromosomal Locations for CCDS 59528.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54922247 54922291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924451 54924555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924670 54924733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924989 54925068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54925592 54925683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54926410 54926489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54926583 54926625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54927043 54927105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54927667 54927781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54928603 54931020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3105 nt):
ATGGATAGGAGAAATGACTACGGATATAGGGTGCCTCTATTTCAGTCCAAGCATCTGAATGGGGATGAGA
GAAGTGGCAGTAATTACAGGCGGATCCCATGGGGCCGGAGGCCTGCACCACCGCGAGATGTGGCCATTTT
ACAAGAAAGGGCTAATAAGTTGGTGAAATACCTGTTGGTTAAGGACCAGACAAAGATCCCCATCAAACGC
TCAGACATGCTGAGGGATGTCATCCAAGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAAGCT
ACACTCTGGAGAAGATGTTTCGAGTCAATCTGAAAGAAATTGATAAGCAAAGTAGCTTGTATATTCTCAT
CAGCACTCAGGAATCCTCTGCAGGCATACTGGGAACGACCAAGGACACACCCAAGCTGGGTCTCCTCATG
GTGATTCTGAGTGTCATTTTTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGCA
AGTTGGGGCTGCGCCCTGGGGTGAGGCATTCACTCTTTGGGGAAGTGAGGAAGCTCATCACAGACGAGTT
TGTGAAGCAGAAGTACCTGGAGTACAAGAGGGTCCCTAACAGCAGACCACCTGAATATGAGTTCTTCTGG
GGCTTGCGCTCCTACCACGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGCAGGGTGCAGAAGAAAG
ACCCCAAGGACTGGGCTGTGCAGTACCGCGAGGCAGTGGAGATGGAAGTCCAAGCTGCAGCTGTGGCTGT
GGCTGAGGCTGAAGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGGAAGCTGTGGCTGGGCCC
TGGAATTGGGATGACATGGATATCGACTGCCTAACAAGGGAAGAGTTAGGCGATGATGCTCAGGCCTGGA
GCAGATTTTCATTTGAAATTGAGGCCAGAGCCCAAGAAAATGCAGATGCCAGCACCAACGTCAACTTCAG
CAGAGGAGCTAGTACCAGGGCTGGCTTCAGCGATGGTGCTAGTATTAGCTTCAATGGTGCACCCAGCTCC
AGTGGTGGCTTCAGTGGTGGACCTGGCATTACCTTTGGTGTTGCACCCAGCACCAGTGCCAGCTTCAGCA
ATACAGCCAGCATTAGCTTTGGTGGTACACTGAGCACTAGCTCCAGCTTCAGCAGCGCAGCCAGCATTAG
CTTTGGTTGTGCACACAGCACCAGCACTAGTTTCAGCAGTGAAGCCAGCATTAGCTTTGGTGGCATGCCT
TGTACCAGTGCCAGCTTTAGTGGTGGAGTCAGCTCTAGTTTTAGTGGCCCACTCAGCACCAGTGCCACTT
TCAGTGGTGGAGCCAGCTCTGGCTTTGGAGGCACACTCAGCACCACGGCTGGCTTTAGTGGTGTACTCAG
CACTAGCACCAGCTTTGGCAGTGCACCCACAACGAGCACAGTCTTCAGTAGTGCGCTTAGCACCAGCACT
GGCTTTGGAGGCATACTCAGCACCAGTGTCTGTTTTGGTGGCTCTCCCAGCTCCAGTGGTAGCTTTGGTG
GTACACTCAGTACCAGTATCTGCTTCGGTGGCTCTCCCTGCACCAGCACTGGCTTTGGAGGCACACTTAG
CACCAGTGTCTCCTTTGGTGGCTCTTCCAGCACCAGTGCCAATTTTGGTGGTACACTAAGTACCAGCATC
TGCTTTGATGGCTCTCCCAGCACTGGTGCTGGCTTTGGTGGTGCTCTCAACACCAGTGCCAGCTTTGGCA
GTGTGCTCAACACCAGTACTGGTTTTGGTGGTGCTATGAGCACCAGTGCTGACTTTGGCGGTACACTAAG
CACCAGTGTCTGCTTTGGTGGCTCTCCTGGCACCAGTGTCAGCTTTGGCAGTGCACTCAACACCAATGCT
GGTTATGGTGGTGCTGTCAGCACCAACACTGACTTTGGTGGTACACTAAGCACCAGCGTCTGTTTTGGTG
GCTCTCCCAGCACCAGTGCTGGCTTTGGTGGTGCACTCAACACCAATGCCAGCTTTGGCTGTGCCGTCAG
CACCAGTGCCAGCTTCAGTGGTGCTGTCAGCACCAGTGCTTGCTTCAGTGGTGCACCAATCACCAACCCT
GGCTTTGGCGGTGCATTTAGCACCAGTGCTGGCTTCGGTGGGGCACTTAGTACCGCTGCTGACTTCGGTG
GTACTCCCAGCAACAGCATTGGCTTTGGTGCTGCTCCCAGCACCAGTGTCAGCTTTGGTGGTGCTCATGG
CACCAGCCTCTGTTTTGGTGGAGCTCCCAGCACCAGCCTCTGCTTTGGCAGTGCATCTAATACTAACCTA
TGCTTTGGTGGCCCTCCTAGCACCAGTGCCTGCTTTAGTGGTGCTACCAGCCCTAGTTTTTGTGATGGAC
CCAGCACCAGTACCGGTTTCAGCTTTGGCAATGGGTTAAGCACCAATGCTGGATTTGGTGGTGGACTGAA
CACCAGTGCTGGCTTTGGTGGTGGCCTAGGCACCAGTGCTGGCTTCAGTGGTGGCCTAAGCACAAGTTCT
GGCTTTGATGGTGGGCTAGGTACCAGCGCTGGCTTCGGTGGAGGACCAGGCACCAGCACTGGTTTTGGTG
GTGGACTGGGCACCAGTGCTGGCTTCAGTGGCGGACTGGGCACCAGTGCTGGCTTTGGTGGTGGACTGGT
CACTAGTGATGGCTTTGGTGGTGGACTGGGCACCAATGCTAGTTTCGGCAGCACACTTGGCACCAGTGCT
GGCTTTAGTGGTGGCCTCAGCACCAGCGATGGCTTTGGCAGTAGGCCTAATGCCAGCTTCGACAGAGGAC
TGAGTACCATCATTGGCTTTGGCAGTGGTTCCAACACCAGCACTGGCTTTACTGGCGAACCCAGCACCAG
CACGGGCTTCAGTAGTGGACCCAGTTCTATTGTTGGCTTCAGCGGTGGACCAAGCACTGGTGTTGGCTTC
TGCAGTGGACCAAGCACCAGTGGCTTCAGCGGTGGACCGAGCACAGGAGCTGGCTTCGGCGGTGGACCAA
ACACTGGTGCTGGCTTTGGTGGTGGACCGAGCACCAGTGCTGGCTTTGGCAGTGGAGCCGCCAGTCTTGG
TGCCTGTGGCTTCTCGTATGGCTAG

Translation (1034 aa):
MDRRNDYGYRVPLFQSKHLNGDERSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIPIKR
SDMLRDVIQEYDEYFPEIIERASYTLEKMFRVNLKEIDKQSSLYILISTQESSAGILGTTKDTPKLGLLM
VILSVIFMNGNKASEAVIWEVLRKLGLRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFW
GLRSYHETSKMKVLKFACRVQKKDPKDWAVQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGP
WNWDDMDIDCLTREELGDDAQAWSRFSFEIEARAQENADASTNVNFSRGASTRAGFSDGASISFNGAPSS
SGGFSGGPGITFGVAPSTSASFSNTASISFGGTLSTSSSFSSAASISFGCAHSTSTSFSSEASISFGGMP
CTSASFSGGVSSSFSGPLSTSATFSGGASSGFGGTLSTTAGFSGVLSTSTSFGSAPTTSTVFSSALSTST
GFGGILSTSVCFGGSPSSSGSFGGTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSI
CFDGSPSTGAGFGGALNTSASFGSVLNTSTGFGGAMSTSADFGGTLSTSVCFGGSPGTSVSFGSALNTNA
GYGGAVSTNTDFGGTLSTSVCFGGSPSTSAGFGGALNTNASFGCAVSTSASFSGAVSTSACFSGAPITNP
GFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTSVSFGGAHGTSLCFGGAPSTSLCFGSASNTNL
CFGGPPSTSACFSGATSPSFCDGPSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSS
GFDGGLGTSAGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSA
GFSGGLSTSDGFGSRPNASFDRGLSTIIGFGSGSNTSTGFTGEPSTSTGFSSGPSSIVGFSGGPSTGVGF
CSGPSTSGFSGGPSTGAGFGGGPNTGAGFGGGPSTSAGFGSGAASLGACGFSYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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