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Report for CCDS2986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2986.1 Public Homo sapiens 3 B4GALT4 24 110 108 CCDS HistoryNCBI Gene:8702Re-query CCDS DB by CCDS ID:2986.1Re-query CCDS DB by GeneID:8702See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359213.7 ENSP00000352144.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359213.7Link to Ensembl Protein Viewer:ENSP00000352144.3Re-query CCDS DB by Nucleotide ID:ENST00000359213Re-query CCDS DB by Protein ID:ENSP00000352144
Original member Current member EBI ENST00000393765.7 ENSP00000377360.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393765.7Link to Ensembl Protein Viewer:ENSP00000377360.2Re-query CCDS DB by Nucleotide ID:ENST00000393765Re-query CCDS DB by Protein ID:ENSP00000377360
Original member Current member EBI ENST00000483209.5 ENSP00000420161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000483209.5Link to Ensembl Protein Viewer:ENSP00000420161.1Re-query CCDS DB by Nucleotide ID:ENST00000483209Re-query CCDS DB by Protein ID:ENSP00000420161
Original member Current member NCBI NM_003778.4 NP_003769.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003778.4Link to Protein Sequence:NP_003769.1Re-query CCDS DB by Nucleotide ID:NM_003778Re-query CCDS DB by Protein ID:NP_003769Link to BLAST:NP_003769.1
Original member Current member NCBI NM_212543.2 NP_997708.1 Accepted alive Link to Nucleotide Sequence:NM_212543.2Link to Protein Sequence:NP_997708.1Re-query CCDS DB by Nucleotide ID:NM_212543Re-query CCDS DB by Protein ID:NP_997708Link to BLAST:NP_997708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003769.1 344 O60513 344 100% 0 0
NP_997708.1 344 O60513 344 100% 0 0

Chromosomal Locations for CCDS 2986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119212549 119212681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119216240 119216344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119218650 119218772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119224058 119224245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119226809 119227041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119229847 119230099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGGCTTCAACCTGACTTTCCACCTTTCCTACAAATTCCGATTACTGTTGCTGTTGACTTTGTGCCTGA
CAGTGGTTGGGTGGGCCACCAGTAACTACTTCGTGGGTGCCATTCAAGAGATTCCTAAAGCAAAGGAGTT
CATGGCTAATTTCCATAAGACCCTCATTTTGGGGAAGGGAAAAACTCTGACTAATGAAGCATCCACGAAG
AAGGTAGAACTTGACAACTGCCCTTCTGTGTCTCCTTACCTCAGAGGCCAGAGCAAGCTCATTTTCAAAC
CAGATCTCACTTTGGAAGAGGTACAGGCAGAAAATCCCAAAGTGTCCAGAGGCCGGTATCGCCCTCAGGA
ATGTAAAGCTTTACAGAGGGTCGCCATCCTCGTTCCCCACCGGAACAGAGAGAAACACCTGATGTACCTG
CTGGAACATCTGCATCCCTTCCTGCAGAGGCAGCAGCTGGATTATGGCATCTACGTCATCCACCAGGCTG
AAGGTAAAAAGTTTAATCGAGCCAAACTCTTGAATGTGGGCTATCTAGAAGCCCTCAAGGAAGAAAATTG
GGACTGCTTTATATTCCACGATGTGGACCTGGTACCCGAGAATGACTTTAACCTTTACAAGTGTGAGGAG
CATCCCAAGCATCTGGTGGTTGGCAGGAACAGCACTGGGTACAGGTTACGTTACAGTGGATATTTTGGGG
GTGTTACTGCCCTAAGCAGAGAGCAGTTTTTCAAGGTGAATGGATTCTCTAACAACTACTGGGGATGGGG
AGGCGAAGACGATGACCTCAGACTCAGGGTTGAGCTCCAAAGAATGAAAATTTCCCGGCCCCTGCCTGAA
GTGGGTAAATATACAATGGTCTTCCACACTAGAGACAAAGGCAATGAGGTGAACGCAGAACGGATGAAGC
TCTTACACCAAGTGTCACGAGTCTGGAGAACAGATGGGTTGAGTAGTTGTTCTTATAAATTAGTATCTGT
GGAACACAATCCTTTATATATCAACATCACAGTGGATTTCTGGTTTGGTGCATGA

Translation (344 aa):
MGFNLTFHLSYKFRLLLLLTLCLTVVGWATSNYFVGAIQEIPKAKEFMANFHKTLILGKGKTLTNEASTK
KVELDNCPSVSPYLRGQSKLIFKPDLTLEEVQAENPKVSRGRYRPQECKALQRVAILVPHRNREKHLMYL
LEHLHPFLQRQQLDYGIYVIHQAEGKKFNRAKLLNVGYLEALKEENWDCFIFHDVDLVPENDFNLYKCEE
HPKHLVVGRNSTGYRLRYSGYFGGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVELQRMKISRPLPE
VGKYTMVFHTRDKGNEVNAERMKLLHQVSRVWRTDGLSSCSYKLVSVEHNPLYINITVDFWFGA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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