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Report for CCDS9555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9555.1 Public Homo sapiens 14 RNASE4 24 110 108 CCDS HistoryNCBI Gene:6038Re-query CCDS DB by CCDS ID:9555.1Re-query CCDS DB by GeneID:6038See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397995.2 ENSP00000381081.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397995.2Link to Ensembl Protein Viewer:ENSP00000381081.2Re-query CCDS DB by Nucleotide ID:ENST00000397995Re-query CCDS DB by Protein ID:ENSP00000381081
Original member Current member EBI ENST00000555597.1 ENSP00000451624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555597.1Link to Ensembl Protein Viewer:ENSP00000451624.1Re-query CCDS DB by Nucleotide ID:ENST00000555597Re-query CCDS DB by Protein ID:ENSP00000451624
Original member Current member EBI ENST00000555835.3 ENSP00000452245.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000555835.3Link to Ensembl Protein Viewer:ENSP00000452245.1Re-query CCDS DB by Nucleotide ID:ENST00000555835Re-query CCDS DB by Protein ID:ENSP00000452245
Original member Current member NCBI NM_001282192.2 NP_001269121.1 Accepted alive Link to Nucleotide Sequence:NM_001282192.2Link to Protein Sequence:NP_001269121.1Re-query CCDS DB by Nucleotide ID:NM_001282192Re-query CCDS DB by Protein ID:NP_001269121Link to BLAST:NP_001269121.1
Original member Current member NCBI NM_001282193.2 NP_001269122.1 Accepted alive Link to Nucleotide Sequence:NM_001282193.2Link to Protein Sequence:NP_001269122.1Re-query CCDS DB by Nucleotide ID:NM_001282193Re-query CCDS DB by Protein ID:NP_001269122Link to BLAST:NP_001269122.1
Original member Current member NCBI NM_002937.5 NP_002928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002937.5Link to Protein Sequence:NP_002928.1Re-query CCDS DB by Nucleotide ID:NM_002937Re-query CCDS DB by Protein ID:NP_002928Link to BLAST:NP_002928.1
Original member Current member NCBI NM_194431.3 NP_919412.1 Accepted alive Link to Nucleotide Sequence:NM_194431.3Link to Protein Sequence:NP_919412.1Re-query CCDS DB by Nucleotide ID:NM_194431Re-query CCDS DB by Protein ID:NP_919412Link to BLAST:NP_919412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269121.1 147 P34096 147 100% 0 0
NP_001269122.1 147 P34096 147 100% 0 0
NP_002928.1 147 P34096 147 100% 0 0
NP_919412.1 147 P34096 147 100% 0 0

Chromosomal Locations for CCDS 9555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20699372 20699815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCTCTGCAGAGGACCCATTCATTGCTTCTGCTTTTGCTGCTGACCCTGCTGGGGCTGGGGCTGGTCC
AGCCCTCCTATGGCCAGGATGGCATGTACCAGCGATTCCTGCGGCAACACGTGCACCCTGAGGAGACAGG
TGGCAGTGATCGCTACTGCAACTTGATGATGCAAAGACGGAAGATGACTTTGTATCACTGCAAGCGCTTC
AACACCTTCATCCATGAAGATATCTGGAACATTCGTAGTATCTGCAGCACCACCAATATCCAATGCAAGA
ACGGCAAGATGAACTGCCATGAGGGTGTAGTGAAGGTCACAGATTGCAGGGACACAGGAAGTTCCAGGGC
ACCCAACTGCAGATATCGGGCCATAGCGAGCACTAGACGTGTTGTCATTGCCTGTGAGGGTAACCCACAG
GTGCCTGTGCACTTTGACGGTTAG

Translation (147 aa):
MALQRTHSLLLLLLLTLLGLGLVQPSYGQDGMYQRFLRQHVHPEETGGSDRYCNLMMQRRKMTLYHCKRF
NTFIHEDIWNIRSICSTTNIQCKNGKMNCHEGVVKVTDCRDTGSSRAPNCRYRAIASTRRVVIACEGNPQ
VPVHFDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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