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Report for CCDS74417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74417.1 Public Homo sapiens 19 SNRNP70 24 110 108 CCDS HistoryNCBI Gene:6625Re-query CCDS DB by CCDS ID:74417.1Re-query CCDS DB by GeneID:6625See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221448.9 ENSP00000221448.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000221448.9Link to Ensembl Protein Viewer:ENSP00000221448.5Re-query CCDS DB by Nucleotide ID:ENST00000221448Re-query CCDS DB by Protein ID:ENSP00000221448
Original member Current member NCBI NM_001301069.2 NP_001287998.1 Accepted alive Link to Nucleotide Sequence:NM_001301069.2Link to Protein Sequence:NP_001287998.1Re-query CCDS DB by Nucleotide ID:NM_001301069Re-query CCDS DB by Protein ID:NP_001287998Link to BLAST:NP_001287998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287998.1 428 P08621-2 428 100% 0 0

Chromosomal Locations for CCDS 74417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49086415 49086561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49090291 49090353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49090466 49090520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49098427 49098491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49098642 49098704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49101390 49101471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49104634 49104735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49107625 49107712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49107822 49108443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGACCCAGTTCCTGCCGCCCAACCTTCTGGCCCTCTTTGCCCCCCGTGACCCTATTCCATACCTGCCAC
CCCTGGAGAAACTGCCACATGAAAAACACCACAATCAACCTTATTGTGGCATTGCGCCGTACATTCGAGA
GTTTGAGGACCCTCGAGATGCCCCTCCTCCAACTCGTGCTGAAACCCGAGAGGAGCGCATGGAGAGGAAA
AGACGGGAAAAGATTGAGCGGCGACAGCAAGAAGTGGAGACAGAGCTTAAAATGTGGGACCCTCACAATG
ATCCCAATGCTCAGGGGGATGCCTTCAAGACTCTCTTCGTGGCGAGAGTGAATTATGACACAACAGAATC
CAAGCTCCGGAGAGAGTTTGAGGTGTACGGACCTATCAAAAGAATACACATGGTCTACAGTAAGCGGTCA
GGAAAGCCCCGTGGCTATGCCTTCATCGAGTACGAACACGAGCGAGACATGCACTCCGCTTACAAACACG
CAGATGGCAAGAAGATTGATGGCAGGAGGGTCCTTGTGGACGTGGAGAGGGGCCGAACCGTGAAGGGCTG
GAGGCCCCGGCGGCTAGGAGGAGGCCTCGGTGGTACCAGAAGAGGAGGGGCTGATGTGAACATCCGGCAT
TCAGGCCGCGATGACACCTCCCGCTACGATGAGAGGGACCGGGACCGGGACCGTGAGCGGGAGCGCAGAG
AGCGGAGCCGGGAGCGAGACAAGGAGCGAGAACGGCGACGCTCCCGCTCCCGGGACCGGCGGAGGCGCTC
ACGGAGTCGCGACAAGGAGGAGCGGAGGCGCTCCAGGGAGCGGAGCAAGGACAAGGACCGGGACCGGAAG
CGGCGAAGCAGCCGGAGTCGGGAGCGGGCCCGGCGGGAGCGGGAGCGCAAGGAGGAGCTGCGTGGCGGCG
GTGGCGACATGGCGGAGCCCTCCGAGGCGGGTGACGCGCCCCCTGATGATGGGCCTCCAGGGGAGCTCGG
GCCTGACGGCCCTGACGGTCCAGAGGAAAAGGGCCGGGATCGTGACCGGGAGCGACGGCGGAGCCACCGG
AGCGAGCGCGAGCGGCGCCGGGACCGGGATCGTGACCGTGACCGTGACCGCGAGCACAAACGGGGGGAGC
GGGGCAGTGAGCGGGGCAGGGATGAGGCCCGAGGTGGGGGCGGTGGCCAGGACAACGGGCTGGAGGGTCT
GGGCAACGACAGCCGAGACATGTACATGGAGTCTGAGGGCGGCGACGGCTACCTGGCTCCGGAGAATGGG
TATTTGATGGAGGCTGCGCCGGAGTGA

Translation (428 aa):
MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK
RREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS
GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRH
SGRDDTSRYDERDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRK
RRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHR
SERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENG
YLMEAAPE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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