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Report for CCDS13008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13008.1 Public Homo sapiens 20 FAM110A 24 110 108 CCDS HistoryNCBI Gene:83541Re-query CCDS DB by CCDS ID:13008.1Re-query CCDS DB by GeneID:83541See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246100.3 ENSP00000246100.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000246100.3Link to Ensembl Protein Viewer:ENSP00000246100.3Re-query CCDS DB by Nucleotide ID:ENST00000246100Re-query CCDS DB by Protein ID:ENSP00000246100
Original member Current member EBI ENST00000304189.6 ENSP00000354163.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304189.6Link to Ensembl Protein Viewer:ENSP00000354163.2Re-query CCDS DB by Nucleotide ID:ENST00000304189Re-query CCDS DB by Protein ID:ENSP00000354163
Original member Current member EBI ENST00000381939.1 ENSP00000371365.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381939.1Link to Ensembl Protein Viewer:ENSP00000371365.1Re-query CCDS DB by Nucleotide ID:ENST00000381939Re-query CCDS DB by Protein ID:ENSP00000371365
Original member Current member EBI ENST00000381941.8 ENSP00000371367.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381941.8Link to Ensembl Protein Viewer:ENSP00000371367.3Re-query CCDS DB by Nucleotide ID:ENST00000381941Re-query CCDS DB by Protein ID:ENSP00000371367
Original member Current member EBI ENST00000541082.2 ENSP00000445228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541082.2Link to Ensembl Protein Viewer:ENSP00000445228.1Re-query CCDS DB by Nucleotide ID:ENST00000541082Re-query CCDS DB by Protein ID:ENSP00000445228
Original member Current member NCBI NM_001042353.3 NP_001035812.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042353.3Link to Protein Sequence:NP_001035812.1Re-query CCDS DB by Nucleotide ID:NM_001042353Re-query CCDS DB by Protein ID:NP_001035812Link to BLAST:NP_001035812.1
Original member Current member NCBI NM_001289145.2 NP_001276074.1 Accepted alive Link to Nucleotide Sequence:NM_001289145.2Link to Protein Sequence:NP_001276074.1Re-query CCDS DB by Nucleotide ID:NM_001289145Re-query CCDS DB by Protein ID:NP_001276074Link to BLAST:NP_001276074.1
Original member Current member NCBI NM_001289146.2 NP_001276075.1 Accepted alive Link to Nucleotide Sequence:NM_001289146.2Link to Protein Sequence:NP_001276075.1Re-query CCDS DB by Nucleotide ID:NM_001289146Re-query CCDS DB by Protein ID:NP_001276075Link to BLAST:NP_001276075.1
Original member Current member NCBI NM_001289147.2 NP_001276076.1 Accepted alive Link to Nucleotide Sequence:NM_001289147.2Link to Protein Sequence:NP_001276076.1Re-query CCDS DB by Nucleotide ID:NM_001289147Re-query CCDS DB by Protein ID:NP_001276076Link to BLAST:NP_001276076.1
Original member Current member NCBI NM_031424.6 NP_113612.1 Accepted alive Link to Nucleotide Sequence:NM_031424.6Link to Protein Sequence:NP_113612.1Re-query CCDS DB by Nucleotide ID:NM_031424Re-query CCDS DB by Protein ID:NP_113612Link to BLAST:NP_113612.1
Original member Current member NCBI NM_207121.5 NP_997004.1 Accepted alive Link to Nucleotide Sequence:NM_207121.5Link to Protein Sequence:NP_997004.1Re-query CCDS DB by Nucleotide ID:NM_207121Re-query CCDS DB by Protein ID:NP_997004Link to BLAST:NP_997004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035812.1 295 Q9BQ89 295 100% 0 0
NP_001276074.1 295 Q9BQ89 295 100% 0 0
NP_001276075.1 295 Q9BQ89 295 100% 0 0
NP_001276076.1 295 Q9BQ89 295 100% 0 0
NP_113612.1 295 Q9BQ89 295 100% 0 0
NP_997004.1 295 Q9BQ89 295 100% 0 0

Chromosomal Locations for CCDS 13008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 844805 845692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGCCTGTGCACACGCTGAGCCCCGGAGCCCCGTCCGCCCCCGCCCTACCTTGCCGCCTGCGGACCAGGG
TCCCTGGCTACCTGCTACGGGGGCCGGCAGATGGTGGAGCCCGGAAACCGAGCGCTGTGGAGCGCCTGGA
GGCCGACAAGGCCAAGTACGTCAAGAGCCTGCACGTGGCCAACACCCGCCAGGAGCCTGTGCAGCCCCTG
CTGTCCAAACAGCCGCTCTTTAGCCCTGAGACTCGCCGCACAGTGCTCACGCCCAGCCGCCGAGCCCTGC
CTGGCCCCTGCCGACGGCCCCAGCTGGACCTGGACATCCTCAGCAGCCTCATCGACTTGTGTGACAGCCC
CGTGTCCCCTGCCGAGGCCAGCCGCACTCCTGGACGGGCCGAGGGAGCCGGCCGTCCTCCCCCAGCCACC
CCTCCGCGACCGCCGCCCAGTACCTCTGCGGTCCGCCGGGTGGACGTCCGCCCCCTGCCCGCCTCGCCTG
CCCGGCCCTGCCCATCACCCGGCCCTGCCGCCGCCTCCAGCCCAGCCCGGCCGCCGGGTTTGCAACGCTC
CAAGTCGGACTTGAGCGAGCGCTTTTCTAGGGCAGCCGCTGATCTCGAGCGCTTTTTTAACTTCTGCGGC
CTGGACCCGGAGGAGGCGAGAGGGTTGGGTGTGGCCCACCTGGCACGGGCCAGCTCGGATATCGTGTCCC
TGGCAGGGCCCAGTGCTGGGCCGGGCAGCTCTGAAGGGGGCTGCTCCCGCCGCAGCTCGGTGACTGTTGA
GGAGCGGGCCCGGGAGCGCGTTCCCTATGGCGTGTCGGTGGTGGAGCGCAATGCCCGCGTGATCAAGTGG
TTGTATGGGCTAAGGCAGGCTCGGGAGAGCCCAGCAGCTGAAGGCTAG

Translation (295 aa):
MPVHTLSPGAPSAPALPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVANTRQEPVQPL
LSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPAT
PPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCG
LDPEEARGLGVAHLARASSDIVSLAGPSAGPGSSEGGCSRRSSVTVEERARERVPYGVSVVERNARVIKW
LYGLRQARESPAAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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