CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS30689.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
30689.1 |
Public |
Homo sapiens |
1 |
FOXJ3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22887](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:30689.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22887](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 30689.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000361346.6 |
ENSP00000354620.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000361346.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000354620.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000361346](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000354620](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000372572.5 |
ENSP00000361653.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000372572.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000361653.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000372572](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000361653](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000372573.5 |
ENSP00000361654.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000372573.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000361654.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000372573](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000361654](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000545068.5 |
ENSP00000439044.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000545068.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000439044.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000545068](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000439044](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001198850.2 |
NP_001185779.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001198850.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001185779.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001198850](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001185779](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001185779.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001198851.2 |
NP_001185780.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001198851.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001185780.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001198851](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001185780](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001185780.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_014947.5 |
NP_055762.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_014947.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_055762.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_014947](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_055762](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_055762.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 30689.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1869 nt): ATGGGTTTGTATGGACAGGCTTGTCCATCTGTAACTTCATTAAGGATGACATCTGAACTGGAGAGCAGCC TAACGTCTATGGACTGGTTACCACAGCTCACCATGAGAGCAGCCATCCAAAAATCTGATGCTACACAAAA TGCACATGGAACAGGAATTTCTAAGAAGAATGCACTCCTTGACCCAAATACAACTCTGGACCAGGAAGAA GTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCT CACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGA GGCTGGCAGTGGTTGGAAGAATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCT CGATCTAAGGATGACCCTGGAAAGGGGTCCTACTGGGCAATAGACACCAATCCGAAGGAAGATGTGCTGC CTACTCGGCCAAAGAAGAGGGCACGATCTGTAGAACGGGCCTCAACTCCATATAGCATAGATTCAGATTC TTTGGGAATGGAGTGTATTATTTCGGGAAGTGCCTCTCCAACTCTGGCAATCAACACTGTGACTAACAAA GTAACATTGTATAACACTGATCAGGATGGTAGTGATAGCCCACGCAGTAGCCTTAACAACAGTCTCTCAG ACCAGAGTTTGGCATCTGTTAATTTGAACAGTGTTGGAAGTGTGCATAGTTATACACCGGTGACAAGCCA TCCAGAATCAGTCTCTCAATCATTAACTCCTCAGCAGCAACCACAGTACAACCTTCCAGAAAGAGACAAG CAACTACTTTTCTCAGAATATAATTTTGAAGATCTTAGTGCCTCATTTCGGAGCCTTTATAAGTCAGTTT TTGAGCAGTCACTTAGTCAACAAGGTTTGATGAACATCCCTTCTGAATCTTCCCAGCAGTCCCACACTTC ATGTACCTATCAGCACTCTCCCAGCAGTACAGTGAGCACTCACCCACACAGCAACCAAAGCAGCCTGTCC AACAGTCATGGCAGTGGCCTCAACACCACAGGCAGTAATTCGGTTGCACAGGTCTCACTGTCTCACCCCC AGATGCACACACAGCCATCTCCACATCCTCCCCATCGACCGCATGGTTTACCGCAGCATCCGCAGCGTTC CCCACACCCAGCACCACACCCACAGCAACACAGCCAGCTCCAGTCCCCTCACCCCCAGCATCCCTCTCCA CATCAACACATACAGCACCATCCGAACCATCAGCATCAGACGTTAACACATCAGGCACCCCCACCCCCAC AACAGGTATCCTGTAATTCTGGTGTTTCAAATGATTGGTATGCGACACTTGATATGCTAAAAGAAAGCTG TCGAATTGCCAGCAGTGTTAATTGGTCAGATGTAGACCTTTCACAGTTTCAAGGTCTGATGGAGAGTATG AGACAGGCAGATCTCAAGAACTGGTCTTTAGACCAGGTTCAGTTTGCCGATCTTTGTTCTTCTCTTAATC AGTTCTTTACACAAACTGGCCTTATACATTCACAGAGTAATGTTCAACAAAATGTTTGTCATGGTGCCAT GCATCCAACAAAACCTTCCCAACACATTGGAACAGGAAATTTGTACATAGATTCTAGGCAAAATCTCCCT CCTTCAGTGATGCCACCCCCTGGTTATCCTCATATCCCACAGGCACTCAGCACTCCAGGAACAACGATGG CAGGCCATCACAGAGCCATGAACCAGCAGCACATGATGCCTTCCCAAGCCTTCCAGATGCGGCGTTCCCT GCCTCCAGATGACATCCAGGATGACTTTGATTGGGATTCAATTGTGTAG
Translation (622 aa): MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDATQNAHGTGISKKNALLDPNTTLDQEE VQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVP RSKDDPGKGSYWAIDTNPKEDVLPTRPKKRARSVERASTPYSIDSDSLGMECIISGSASPTLAINTVTNK VTLYNTDQDGSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTSHPESVSQSLTPQQQPQYNLPERDK QLLFSEYNFEDLSASFRSLYKSVFEQSLSQQGLMNIPSESSQQSHTSCTYQHSPSSTVSTHPHSNQSSLS NSHGSGLNTTGSNSVAQVSLSHPQMHTQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPSP HQHIQHHPNHQHQTLTHQAPPPPQQVSCNSGVSNDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESM RQADLKNWSLDQVQFADLCSSLNQFFTQTGLIHSQSNVQQNVCHGAMHPTKPSQHIGTGNLYIDSRQNLP PSVMPPPGYPHIPQALSTPGTTMAGHHRAMNQQHMMPSQAFQMRRSLPPDDIQDDFDWDSIV
|