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Report for CCDS2829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2829.1 Public Homo sapiens 3 C3orf18 24 110 108 CCDS HistoryNCBI Gene:51161Re-query CCDS DB by CCDS ID:2829.1Re-query CCDS DB by GeneID:51161See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357203.8 ENSP00000349732.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357203.8Link to Ensembl Protein Viewer:ENSP00000349732.3Re-query CCDS DB by Nucleotide ID:ENST00000357203Re-query CCDS DB by Protein ID:ENSP00000349732
Original member Current member EBI ENST00000426034.5 ENSP00000387606.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426034.5Link to Ensembl Protein Viewer:ENSP00000387606.1Re-query CCDS DB by Nucleotide ID:ENST00000426034Re-query CCDS DB by Protein ID:ENSP00000387606
Original member Current member EBI ENST00000449241.5 ENSP00000404913.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449241.5Link to Ensembl Protein Viewer:ENSP00000404913.1Re-query CCDS DB by Nucleotide ID:ENST00000449241Re-query CCDS DB by Protein ID:ENSP00000404913
Original member Current member NCBI NM_001171740.3 NP_001165211.1 Accepted alive Link to Nucleotide Sequence:NM_001171740.3Link to Protein Sequence:NP_001165211.1Re-query CCDS DB by Nucleotide ID:NM_001171740Re-query CCDS DB by Protein ID:NP_001165211Link to BLAST:NP_001165211.1
Original member Current member NCBI NM_001171741.3 NP_001165212.1 Accepted alive Link to Nucleotide Sequence:NM_001171741.3Link to Protein Sequence:NP_001165212.1Re-query CCDS DB by Nucleotide ID:NM_001171741Re-query CCDS DB by Protein ID:NP_001165212Link to BLAST:NP_001165212.1
Original member Current member NCBI NM_016210.5 NP_057294.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016210.5Link to Protein Sequence:NP_057294.2Re-query CCDS DB by Nucleotide ID:NM_016210Re-query CCDS DB by Protein ID:NP_057294Link to BLAST:NP_057294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165211.1 162 Q9UK00-1 162 100% 0 0
NP_001165212.1 162 Q9UK00-1 162 100% 0 0
NP_057294.2 162 Q9UK00-1 162 100% 0 0

Chromosomal Locations for CCDS 2829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50559657 50559737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50560917 50561064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50561722 50561747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50565466 50565699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGAACTCCAGGACCGCATCTGCTAGGGGCTGGTTCAGCAGCCGCCCACCCACCTCTGAGTCTGACCTGG
AACCTGCCACAGATGGGCCAGCCTCCGAGACCACTACCCTCAGCCCAGAGGCCACCACCTTTAATGACAC
CAGAATCCCTGATGCAGCTGGTGGCACGGCCGGCGTGGGTACCATGCTTCTGTCCTTTGGGATCATCACG
GTGATAGGCCTGGCTGTGGCCTTGGTTTTGTACATCAGGAAGAAGAAGAGGCTGGAGAAGCTACGCCACC
AGCTCATGCCCATGTACAACTTCGACCCCACGGAGGAACAAGATGAGTTGGAGCAGGAGCTGCTGGAGCA
TGGGCGGGACGCCGCCTCTGTACAGGCTGCTACTTCTGTGCAGGCCATGCAGGGCAAGACTACTCTGCCC
TCCCAGGGCCCACTGCAGAGACCCAGCCGGCTGGTGTTTACCGATGTGGCCAATGCCATCCATGCGTGA

Translation (162 aa):
MNSRTASARGWFSSRPPTSESDLEPATDGPASETTTLSPEATTFNDTRIPDAAGGTAGVGTMLLSFGIIT
VIGLAVALVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRDAASVQAATSVQAMQGKTTLP
SQGPLQRPSRLVFTDVANAIHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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