NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54662.1 Public Homo sapiens 3 VEPH1 24 110 108 CCDS HistoryNCBI Gene:79674Re-query CCDS DB by CCDS ID:54662.1Re-query CCDS DB by GeneID:79674See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392833.6 ENSP00000376578.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392833.6Link to Ensembl Protein Viewer:ENSP00000376578.2Re-query CCDS DB by Nucleotide ID:ENST00000392833Re-query CCDS DB by Protein ID:ENSP00000376578
Original member Current member NCBI NM_001167911.2 NP_001161383.1 Accepted alive Link to Nucleotide Sequence:NM_001167911.2Link to Protein Sequence:NP_001161383.1Re-query CCDS DB by Nucleotide ID:NM_001167911Re-query CCDS DB by Protein ID:NP_001161383Link to BLAST:NP_001161383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161383.1 788 Q14D04-2 788 100% 0 0

Chromosomal Locations for CCDS 54662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 157261134 157261370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157265526 157265662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157286557 157286674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157317062 157317201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157363364 157363761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157364303 157364512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157381156 157381376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157413881 157414090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157428322 157428488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157460181 157460355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157470314 157470529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157495212 157495349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGCATCAACTGTTCAGACTGGTTTTGGGACAAAAAGATCTTTCACGAGCTGGGGACCTCTTCTCCTTAG
ATGACTCTGAGATTGAAGACAGCCTTACAGAAGCTTTGGAGCAAATTAAGATAATTAGCTCATCTTCAGA
TTACCAAACCAATAACAATGACCAGGCAGTAGTTGAAATCTGTATCACAAGAATCACAACAGCCATCAGA
GAGACCGAGTCCATTGAAAAGCATGCAAAGGCCCTTGTGGGGCTCTGGGACTCCTGCTTGGAACATAACC
TGAGACCCTTTGGGAAAGACGAAGACACTCCTCATGCAAAAATCGCATCTGATATCATGAGTTGCATTTT
ACAGAATTACAACCGACCCCCAGTGATGGCATTAGCCATCCCCATTGCAGTGAAATTCCTCCACAGAGGC
AACAAGGAACTGTGCAGGAATATGTCTAACTACCTGTCTCTGGCTGCAATTACCAAGGCAGATCTCCTGG
CTGATCACACGGAAGTTATAGTAAAGAGCATACTCCAAGGTAACACCATGTTGTTGAGAGTGTTACCTGC
TGTGTATGAAAAGCAGCCTCAGCCAATTAATAGACACCTGACAGAACTCCTGGCCTTGATGTCTCAGCTG
GAACAGCCAGAACAGTACCATCTACTACGGCTTTTGCATGTAGCAGCAAAGAAAAAACAACTCGAGGTAG
TTCAGAAGTGTATTCCTTTCCTAATTGGGCATTTGAAGGATTCAACCCATAATGACATCATCCTAAACAT
CCTCATAGAGATAGCAGTCTATGAGCCAGTGGCTTTGAACAGTTTTCTTCCAATGCTGAAAGAGATTGGT
GAGAGATTCCCCTACCTCACTGGACAGATGGCAAGGATTTATGGAGCTGTTGGGCATGTGGATGAAGAGA
GAGCCAGGAGCTGCCTGACATACCTGGTGAGCCAACTGGCCAACATGGAGCATTCGTTTCACCATATTCT
CCTGCTGGAGATTAAAAGCATCACCGACACCTTCTCCTCAATCTTGGGCCCTCAGAGCAGAGACATCTTC
CGCATGAGCAACAGCTTCACCGCCATTGCTAAACTCCTTACCCGACAACTGGAAAATACCAAGGCTGGAA
GTGGCAGGAGAAAAATCAGCACTGAAATTGAATTCCCTGAGAAACTGGAAGAAACCAAGCTCATAGTAAC
TGAAAATGAAGACCATGAAAAACTCCAAGTTAAAATCCAGGCTTTTGAAGACAAGATAAATGCAGGGAGC
AATACCCCTGGCTCTATCAGAAGATATAGTCTGGGCCAAGTTTCTAAAGAAGAAAGAAAAAACATTAGAT
TTAACAGGTCAAAAAGTTTGGCTTTCCACACTATGCTCACAAAGGGTGTGGGTTCAGATGACGGCGAAGA
TGAAAACAGGGGAGACATACCAGCCAGCATCTCTCTTTCAGAAATAGACCCACTTGGCCAAGGAAATGAC
AAGCTGCCGTTTAAGACAGACACTGAGAGATCACAGCTGGGGGAGTCTTCAGTTTCATACCCAAATATTA
TACATATAGACTCAGAGAATTTGTCAGAAACTGTTAAAGAAAACTCCCAGGAAGAAACTCCAGAGACAAC
TGCAAGTCCTATAGAATACCAAGATAAGCTCTACTTGCACTTAAAAAAAAACCTCAGCAAAGTGAAAGCA
TATGCCATGGAAATTGGAAAGAAGATTCCAGTCCCTGATCAGTGTACCATTGAAGACACTGTGAGAAGTT
GTGTAGCAAAGTTGTTCTTCACCTGCTCCCTGAAGGGTCATTACTGCCTATACAGTAAGTCCAGTTTTAT
TCTCATCAGCCAAGAACCTCAGCCATGGATCCAGATCATGTTTCTATTTCAGCAGGATCTGGACCAGGTA
CAGCTCCATCTGGAAGAAGTGAGGTTCTTTGACGTGTTTGGCTTCAGTGAAACAGCAGGAGCATGGCAAT
GCTTCATGTGCAACAATCCTGAGAAAGCAACTGTTGTAAATCAAGATGGCCAGCCTCTCATAGAAGGAAA
ACTTAAAGAGAAGCAAGTCAGATGGAAGTTCATCAAAAGGTGGAAAACACGCTATTTTACACTGGCTGGA
AATCAACTTCTGTTTCAAAAAGGAAAGTCTAAAGATGACCCTGACGACTGCCCAATAGAACTCAGCAAAG
TACAGAGTGTGAAGGCTGTGGCCAAGAAACGCAGGGACCGCTCTCTCCCCCGGGCTTTCGAAATCTTCAC
AGACAATAAAACCTATGTCTTTAAGGCCAAGGATGAGAAGAATGCAGAAGAATGGCTCCAGTGCATCAAC
GTGGCAGTTGCCCAAGCCAAAGAAAGGGAAAGTAGAGAAGTAACCACATATCTGTAG

Translation (788 aa):
MHQLFRLVLGQKDLSRAGDLFSLDDSEIEDSLTEALEQIKIISSSSDYQTNNNDQAVVEICITRITTAIR
ETESIEKHAKALVGLWDSCLEHNLRPFGKDEDTPHAKIASDIMSCILQNYNRPPVMALAIPIAVKFLHRG
NKELCRNMSNYLSLAAITKADLLADHTEVIVKSILQGNTMLLRVLPAVYEKQPQPINRHLTELLALMSQL
EQPEQYHLLRLLHVAAKKKQLEVVQKCIPFLIGHLKDSTHNDIILNILIEIAVYEPVALNSFLPMLKEIG
ERFPYLTGQMARIYGAVGHVDEERARSCLTYLVSQLANMEHSFHHILLLEIKSITDTFSSILGPQSRDIF
RMSNSFTAIAKLLTRQLENTKAGSGRRKISTEIEFPEKLEETKLIVTENEDHEKLQVKIQAFEDKINAGS
NTPGSIRRYSLGQVSKEERKNIRFNRSKSLAFHTMLTKGVGSDDGEDENRGDIPASISLSEIDPLGQGND
KLPFKTDTERSQLGESSVSYPNIIHIDSENLSETVKENSQEETPETTASPIEYQDKLYLHLKKNLSKVKA
YAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPWIQIMFLFQQDLDQV
QLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFIKRWKTRYFTLAG
NQLLFQKGKSKDDPDDCPIELSKVQSVKAVAKKRRDRSLPRAFEIFTDNKTYVFKAKDEKNAEEWLQCIN
VAVAQAKERESREVTTYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH