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Report for CCDS54104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54104.1 Public Homo sapiens 17 RNF135 24 110 108 CCDS HistoryNCBI Gene:84282Re-query CCDS DB by CCDS ID:54104.1Re-query CCDS DB by GeneID:84282See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535306.6 ENSP00000440470.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535306.6Link to Ensembl Protein Viewer:ENSP00000440470.2Re-query CCDS DB by Nucleotide ID:ENST00000535306Re-query CCDS DB by Protein ID:ENSP00000440470
Original member Current member NCBI NM_001184992.2 NP_001171921.1 Accepted alive Link to Nucleotide Sequence:NM_001184992.2Link to Protein Sequence:NP_001171921.1Re-query CCDS DB by Nucleotide ID:NM_001184992Re-query CCDS DB by Protein ID:NP_001171921Link to BLAST:NP_001171921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171921.1 286 Q8IUD6-3 286 100% 0 0

Chromosomal Locations for CCDS 54104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30971074 30971445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30984617 30984760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30987944 30988106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30993840 30993904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30997242 30997331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30998662 30998688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGCGGGCCTGGGCCTGGGCTCCGCCGTTCCCGTGTGGCTGGCCGAGGACGACCTCGGCTGCATCATCT
GCCAGGGGCTGCTGGACTGGCCCGCCACGCTGCCCTGCGGCCACAGCTTCTGCCGCCACTGCCTGGAGGC
CCTGTGGGGCGCCCGCGACGCCCGCCGCTGGGCCTGCCCCACTTGCCGCCAGGGCGCCGCGCAGCAGCCG
CACCTGCGGAAGAACACGCTACTGCAGGACCTGGCCGACAAGTACCGCCGCGCCGCACGCGAGATACAGG
CGGGCTCCGACCCTGCCCACTGCCCCTGCCCGGGCTCCAGTTCCCTCTCCAGCGCGGCCGCGAGGCCCCG
GCGCCGCCCGGAACTGCAGCGGGTGGCAGTAGAGAAGAGCATCACAGAAGTTGCTCAGGAGCTGACAGAG
CTGGTGGAACATCTTGTAGACATTGTCAGAAGCCTGCAGAATCAGAGGCCCCTATCAGAATCTGGACCAG
ACAACGAACTGAGCATCCTGGGCAAGGCTTTTTCTTCTGGGGTGGATCTTTCCATGGCTTCTCCAAAGCT
GGTGACTTCCGACACAGCTGCAGGGAAAATCAGAGATATTCTCCATGACCTAGAAGAAATTCAGGAAAAA
TTACAAGAAAGCGTCACCTGGAAAGAGGCTCCTGAAGCACAAATGCAGGGTTCTCTGTTGCCCAGGCTGG
AGTGCAGTGGCACAATCACTGCAGCCTCGATCTCTCAGGCTCAGGAGAACTCCTGGAAGCCCCGTCTTCC
TCCTCATGCCCATTGCCTGACCAGAGCCACCCTGCACTCAGGAGAGCTTCTCGGTTTGCTCAGTGGGCCA
TCCATCCAACCTTTAACTTGA

Translation (286 aa):
MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACPTCRQGAAQQP
HLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRPELQRVAVEKSITEVAQELTE
LVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEK
LQESVTWKEAPEAQMQGSLLPRLECSGTITAASISQAQENSWKPRLPPHAHCLTRATLHSGELLGLLSGP
SIQPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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