NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12844.1 Public Homo sapiens 19 ZNF613 24 110 108 CCDS HistoryNCBI Gene:79898Re-query CCDS DB by CCDS ID:12844.1Re-query CCDS DB by GeneID:79898See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391794.8 ENSP00000375671.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391794.8Link to Ensembl Protein Viewer:ENSP00000375671.3Re-query CCDS DB by Nucleotide ID:ENST00000391794Re-query CCDS DB by Protein ID:ENSP00000375671
Original member Current member NCBI NM_024840.4 NP_079116.2 Accepted alive Link to Nucleotide Sequence:NM_024840.4Link to Protein Sequence:NP_079116.2Re-query CCDS DB by Nucleotide ID:NM_024840Re-query CCDS DB by Protein ID:NP_079116Link to BLAST:NP_079116.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079116.2 581 Q6PF04-2 581 100% 0 0

Chromosomal Locations for CCDS 12844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51940302 51940335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51940617 51940709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51944119 51945737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGTTGGAGAACTATAGCAACCTCGTGTCAGTGGGGTATCAAGCCAGCAAACCAGATGCACTCTTCAAGT
TGGAACAAGGAGAGCCATGGACAGTAGAAAATGAAATCCACAGCCAAATCTGTCCAGAAATCAAGAAAGT
TGACAATCATCTACAGATGCACTCACAAAAGCAAAGATGTCTGAAGAGAGTGGAACAATGCCATAAACAT
AATGCATTTGGAAACATCATTCATCAGAGGAAAAGTGATTTTCCTTTAAGGCAAAATCATGATACATTTG
ACTTACATGGGAAAATACTGAAATCAAATTTAAGTTTAGTCAACCAGAACAAAAGGTATGAAATCAAGAA
TTCTGTGGGGGTTAATGGAGATGGGAAATCCTTCCTTCATGCCAAGCATGAACAATTTCATAATGAAATG
AACTTCCCCGAAGGTGGAAATTCTGTGAATACAAATTCACAATTCATTAAGCATCAGCGAACTCAAAACA
TAGATAAACCCCATGTATGCACTGAGTGTGGGAAGGCTTTCCTCAAGAAGTCTCGCCTCATCTATCATCA
GAGAGTTCACACTGGGGAGAAACCTCATGGATGCAGTATATGTGGGAAAGCCTTCTCCAGAAAGTCCGGG
CTCACTGAACACCAGAGAAACCACACAGGAGAGAAACCCTATGAATGCACTGAATGTGACAAAGCATTCC
GCTGGAAATCACAGCTCAATGCACACCAGAAAATTCATACAGGAGAGAAGTCATATATATGCAGTGATTG
TGGAAAAGGCTTCATCAAGAAGTCTCGGCTCATTAATCATCAGAGAGTTCATACAGGAGAGAAACCACAT
GGATGCAGCCTGTGTGGGAAGGCCTTCTCCAAAAGGTCCAGGCTCACTGAACACCAGAGAACTCATACAG
GAGAGAAACCCTATGAATGCACTGAATGTGACAAAGCATTCCGCTGGAAATCACAGCTCAATGCACATCA
GAAAGCTCACACAGGAGAGAAGTCATATATATGCCGTGATTGTGGAAAAGGCTTCATTCAGAAGGGAAAT
CTCATTGTACATCAGCGAATTCATACTGGAGAAAAACCCTATATATGCAATGAATGTGGAAAAGGCTTCA
TCCAAAAGGGCAACCTCCTTATTCATCGACGTACTCACACTGGAGAGAAACCCTATGTATGCAATGAATG
TGGGAAAGGCTTCAGCCAGAAGACATGTTTAATATCCCATCAGAGATTTCACACAGGAAAGACACCCTTT
GTATGTACTGAGTGTGGAAAATCCTGCTCACACAAGTCAGGTCTCATTAACCACCAGAGAATTCACACAG
GAGAGAAACCCTATACATGCAGTGACTGTGGGAAAGCTTTCAGAGATAAATCATGTCTCAACAGACATCG
GAGAACTCATACAGGGGAGAGACCGTATGGATGCTCTGATTGTGGGAAAGCTTTCTCCCACTTGTCATGC
CTTGTTTATCATAAGGGAATGCTGCATGCAAGAGAGAAATGTGTAGGTTCAGTCAAATTGGAAAATCCTT
GCTCAGAGAGTCATAGCTTATCACATACACGTGATCTCATACAGGATAAAGACTCTGTTAACATGGTGAC
TCTGCAGATGCCTTCTGTGGCAGCTCAGACCTCATTAACTAACAGTGCGTTCCAAGCAGAGAGCAAAGTA
GCCATTGTGAGCCAGCCTGTTGCCAGAAGTTCAGTCTCAGCAGATAGTAGAATTTGCACAGAATAA

Translation (581 aa):
MLENYSNLVSVGYQASKPDALFKLEQGEPWTVENEIHSQICPEIKKVDNHLQMHSQKQRCLKRVEQCHKH
NAFGNIIHQRKSDFPLRQNHDTFDLHGKILKSNLSLVNQNKRYEIKNSVGVNGDGKSFLHAKHEQFHNEM
NFPEGGNSVNTNSQFIKHQRTQNIDKPHVCTECGKAFLKKSRLIYHQRVHTGEKPHGCSICGKAFSRKSG
LTEHQRNHTGEKPYECTECDKAFRWKSQLNAHQKIHTGEKSYICSDCGKGFIKKSRLINHQRVHTGEKPH
GCSLCGKAFSKRSRLTEHQRTHTGEKPYECTECDKAFRWKSQLNAHQKAHTGEKSYICRDCGKGFIQKGN
LIVHQRIHTGEKPYICNECGKGFIQKGNLLIHRRTHTGEKPYVCNECGKGFSQKTCLISHQRFHTGKTPF
VCTECGKSCSHKSGLINHQRIHTGEKPYTCSDCGKAFRDKSCLNRHRRTHTGERPYGCSDCGKAFSHLSC
LVYHKGMLHAREKCVGSVKLENPCSESHSLSHTRDLIQDKDSVNMVTLQMPSVAAQTSLTNSAFQAESKV
AIVSQPVARSSVSADSRICTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH