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Report for CCDS82580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82580.1 Public Homo sapiens 2 EFHD1 24 110 108 CCDS HistoryNCBI Gene:80303Re-query CCDS DB by CCDS ID:82580.1Re-query CCDS DB by GeneID:80303See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409708.5 ENSP00000386243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409708.5Link to Ensembl Protein Viewer:ENSP00000386243.1Re-query CCDS DB by Nucleotide ID:ENST00000409708Re-query CCDS DB by Protein ID:ENSP00000386243
Original member Current member EBI ENST00000410095.5 ENSP00000386685.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410095.5Link to Ensembl Protein Viewer:ENSP00000386685.1Re-query CCDS DB by Nucleotide ID:ENST00000410095Re-query CCDS DB by Protein ID:ENSP00000386685
Original member Current member NCBI NM_001308395.2 NP_001295324.1 Accepted alive Link to Nucleotide Sequence:NM_001308395.2Link to Protein Sequence:NP_001295324.1Re-query CCDS DB by Nucleotide ID:NM_001308395Re-query CCDS DB by Protein ID:NP_001295324Link to BLAST:NP_001295324.1

Chromosomal Locations for CCDS 82580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 232662836 232662949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232672309 232672443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 232681585 232681719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGAGCTGAAGCTGATGATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCA
AGGAGGTGGATGAGGACTTCGATGGCAAGCTCAGCTTCCGGGAGTTCCTGCTCATTTTCCACAAGGCCGC
GGCAGGGGAGCTGCAGGAGGACAGTGGGCTGATGGCGCTGGCAAAGCTTTCTGAGATCGATGTGGCCCTG
GAGGGTGTCAAAGGTGCCAAGAACTTCTTTGAAGCCAAGGTCCAAGCCTTGTCATCGGCCAGTAAGTTTG
AAGCAGAGTTGAAAGCTGAGCAAGATGAGCGGAAGCGGGAGGAGGAGGAGAGGCGGCTCCGCCAGGCAGC
CTTCCAGAAACTCAAGGCCAACTTCAATACATAG

Translation (127 aa):
MELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVAL
EGVKGAKNFFEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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