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Report for CCDS7331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7331.1 Public Homo sapiens 10 SYNPO2L 24 110 108 CCDS HistoryNCBI Gene:79933Re-query CCDS DB by CCDS ID:7331.1Re-query CCDS DB by GeneID:79933See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372873.8 ENSP00000361964.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372873.8Link to Ensembl Protein Viewer:ENSP00000361964.4Re-query CCDS DB by Nucleotide ID:ENST00000372873Re-query CCDS DB by Protein ID:ENSP00000361964
Original member Current member NCBI NM_024875.5 NP_079151.2 Accepted alive Link to Nucleotide Sequence:NM_024875.5Link to Protein Sequence:NP_079151.2Re-query CCDS DB by Nucleotide ID:NM_024875Re-query CCDS DB by Protein ID:NP_079151Link to BLAST:NP_079151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079151.2 753 Q9H987-2 753 100% 0 0

Chromosomal Locations for CCDS 7331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 73646718 73648879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 73650908 73651007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGAGACCTTTGAGCCCATCAGCCAAGAGCCCCTCAGCCAAGCCAGCTATGACAAAGCCCCAGACCCAG
TTCCTGAGCTCCAAGACTCGTTCTATGCAGAACTGCAACGTGCAGAGAGCCTCCAAGAGAAGAGCATAAA
AGAGGCCAAGACCAAATGCAGGACAATTGCATCCCTGCTCACTGCAGCCCCCAACCCCCACTCCAAAGGG
GTACTTATGTTTAAGAAACGGCGGCAGAGAGCCAAGAAGTACACCCTGGTGAGCTTCGGGGCTGCTGCTG
GGACAGGCGCTGAGGAGGAGGACGGCGTTCCCCCCACGAGTGAGTCCGAGCTGGACGAAGAAGCCTTCTC
TGACGCCCGCAGCCTCACCAATCAATCTGACTGGGACAGTCCCTATCTGGACATGGAGCTTGCCAGGGCG
GGCTCAAGAGCATCAGAGGGCCAGGGCTCTGGGCTGGGAGGGCAGCTGAGTGAGGTCTCTGGGCGAGGGG
TGCAGCTCTTTGAACAGCAGCGCCAGCGCGCAGACTCCAGCACCCAGGAACTGGCACGGGTCGAACCAGC
AGCCATGCTCAACGGGGAAGGCCTGCAGTCACCACCTCGGGCCCAGAGTGCTCCCCCAGAGGCAGCTGTG
CTCCCACCCAGCCCCTTGCCGGCGCCTGTAGCCAGCCCCAGACCCTTCCAACCAGGTGGTGGAGCCCCGA
CCCCAGCTCCAAGCATCTTTAACCGGTCAGCCAGGCCCTTTACCCCGGGCCTACAAGGGCAGCGGCCAAC
TACCACCTCGGTTATTTTCCGGCCTTTAGCCCCCAAAAGGGCGAACGACAGCCTGGGGGGCCTCAGCCCC
GCCCCACCCCCCTTCTTGTCTTCGCAGGGGCCCACCCCTCTGCCCAGCTTCACTTCAGGGGTTCCCAGCC
ACGCGCCAGTCTCTGGTTCCCCCAGCACCCCACGCTCCTCGGGCCCTGTGACAGCCACCAGCTCCCTGTA
CATCCCAGCCCCTAGTCGGCCTGTCACCCCAGGTGGAGCTCCAGAGCCCCCCGCTCCTCCTAGCGCAGCT
GCCATGACCTCCACCGCTTCTATCTTCCTATCTGCGCCTTTGCGACCCTCTGCGCGCCCAGAGGCGCCTG
CCCCAGGCCCAGGGGCTCCTGAGCCCCCCAGCGCTCGCGAGCAGCGCATCTCTGTGCCAGCTGCCCGCAC
GGGTATCCTGCAGGAGGCCCGGCGCCGGGGGACCCGGAAGCAGATGTTCCGGCCGGGAAAGGAGGAGACG
AAGAACTCGCCCAACCCCGAGCTGCTATCGCTGGTACAGAACCTGGATGAAAAGCCTCGGGCCGGGGGTG
CAGAATCTGGTCCTGAAGAAGATGCTCTGAGCCTCGGGGCTGAAGCCTGCAACTTCATGCAGCCAGTAGG
GGCCAGGAGTTACAAGACCCTGCCTCACGTGACACCTAAGACCCCCCCTCCAATGGCTCCCAAGACCCCG
CCCCCTATGACTCCTAAGACTCCACCCCCAGTGGCTCCTAAGCCCCCATCTCGAGGGCTCCTTGATGGGC
TCGTGAATGGGGCAGCCTCTTCGGCTGGAATCCCTGAGCCACCAAGGCTGCAGGGCAGGGGTGGGGAGCT
GTTTGCTAAGCGGCAGAGCCGTGCGGACAGGTATGTGGTGGAAGGTACACCTGGTCCTGGTCTTGGCCCT
CGGCCTAGAAGTCCTTCTCCTACCCCGTCTCTGCCCCCTTCCTGGAAATATTCACCCAACATCCGTGCCC
CGCCTCCTATTGCTTACAACCCACTGCTCTCTCCCTTTTTCCCCCAGGCGGCCCGAACTCTCCCTAAGGC
CCAATCCCAGGGGCCTCGGGCAACACCCAAGCAGGGCATCAAGGCTCTAGATTTTATGCGGCATCAGCCC
TATCAACTTAAAACTGCCATGTTCTGTTTTGATGAGGTTCCCCCGACTCCTGGCCCTATCGCCTCAGGGT
CCCCCAAAACTGCCCGAGTCCAGGAGATTCGCCGGTTTTCCACTCCGGCACCCCAGCCCACTGCAGAACC
CCTGGCTCCCACTGTGCTTGCCCCCCGAGCAGCCACTACACTGGATGAGCCCATCTGGAGAACAGAACTG
GCCTCAGCCCCTGTTCCTAGCCCAGCCCCTCCTCCAGAGGCTCCCAGGGGCCTTGGGGCTTCTCCCAGCT
CCTGCGGTTTCCAGGTAGCCAGGCCCCGATTTTCAGCCACCAGAACAGGATTGCAAGCTCATGTGTGGAG
GCCTGGGGCAGGGCACCAGTGA

Translation (753 aa):
METFEPISQEPLSQASYDKAPDPVPELQDSFYAELQRAESLQEKSIKEAKTKCRTIASLLTAAPNPHSKG
VLMFKKRRQRAKKYTLVSFGAAAGTGAEEEDGVPPTSESELDEEAFSDARSLTNQSDWDSPYLDMELARA
GSRASEGQGSGLGGQLSEVSGRGVQLFEQQRQRADSSTQELARVEPAAMLNGEGLQSPPRAQSAPPEAAV
LPPSPLPAPVASPRPFQPGGGAPTPAPSIFNRSARPFTPGLQGQRPTTTSVIFRPLAPKRANDSLGGLSP
APPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPAPPSAA
AMTSTASIFLSAPLRPSARPEAPAPGPGAPEPPSAREQRISVPAARTGILQEARRRGTRKQMFRPGKEET
KNSPNPELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPVGARSYKTLPHVTPKTPPPMAPKTP
PPMTPKTPPPVAPKPPSRGLLDGLVNGAASSAGIPEPPRLQGRGGELFAKRQSRADRYVVEGTPGPGLGP
RPRSPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPKAQSQGPRATPKQGIKALDFMRHQP
YQLKTAMFCFDEVPPTPGPIASGSPKTARVQEIRRFSTPAPQPTAEPLAPTVLAPRAATTLDEPIWRTEL
ASAPVPSPAPPPEAPRGLGASPSSCGFQVARPRFSATRTGLQAHVWRPGAGHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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