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Report for CCDS54948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54948.1 Public Homo sapiens 5 CREBRF 24 110 108 CCDS HistoryNCBI Gene:153222Re-query CCDS DB by CCDS ID:54948.1Re-query CCDS DB by GeneID:153222See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520420.5 ENSP00000428290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520420.5Link to Ensembl Protein Viewer:ENSP00000428290.1Re-query CCDS DB by Nucleotide ID:ENST00000520420Re-query CCDS DB by Protein ID:ENSP00000428290
Original member Current member EBI ENST00000522692.5 ENSP00000431107.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522692.5Link to Ensembl Protein Viewer:ENSP00000431107.1Re-query CCDS DB by Nucleotide ID:ENST00000522692Re-query CCDS DB by Protein ID:ENSP00000431107
Original member Current member NCBI NM_001168393.2 NP_001161865.1 Accepted alive Link to Nucleotide Sequence:NM_001168393.2Link to Protein Sequence:NP_001161865.1Re-query CCDS DB by Nucleotide ID:NM_001168393Re-query CCDS DB by Protein ID:NP_001161865Link to BLAST:NP_001161865.1
Original member Current member NCBI NM_001168394.2 NP_001161866.1 Accepted alive Link to Nucleotide Sequence:NM_001168394.2Link to Protein Sequence:NP_001161866.1Re-query CCDS DB by Nucleotide ID:NM_001168394Re-query CCDS DB by Protein ID:NP_001161866Link to BLAST:NP_001161866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161865.1 417 Q8IUR6-2 417 100% 0 0
NP_001161866.1 417 Q8IUR6-2 417 100% 0 0

Chromosomal Locations for CCDS 54948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 173080776 173080784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173086501 173086626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173090315 173091433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGCCTCAGCCTAGTGTAAGCGGAATGGATCCGCCTTTCGGGGATGCCTTTCGAAGCCACACCTTTTCGG
AACAAACTCTGATGAGCACAGATCTCTTAGCAAACAGTTCGGATCCAGATTTCATGTATGAACTGGATAG
AGAGATGAACTACCAACAGAATCCTAGAGACAACTTTCTTTCTTTGGAGGACTGCAAAGACATTGAAAAT
CTGGAGTCTTTCACAGATGTCCTGGATAATGAGGGTGCTTTAACCTCAAACTGGGAACAGTGGGATACAT
ACTGTGAAGACCTAACGAAATATACCAAACTAACCAGCTGTGACATCTGGGGAACAAAAGAAGTGGATTA
CTTGGGTCTTGATGACTTTTCTAGTCCTTACCAAGATGAAGAGGTTATAAGTAAAACTCCAACTTTAGCT
CAACTTAATAGTGAGGACTCACAGTCTGTTTCTGATTCCCTTTATTACCCCGATTCACTTTTCAGTGTCA
AACAAAATCCCTTACCCTCTTCATTCCCTGGTAAAAAGATCACAAGCAGAGCAGCTGCTCCTGTGTGTTC
TTCTAAGACTCTGCAGGCTGAGGTCCCTTTGTCAGACTGTGTCCAAAAAGCAAGTAAACCCACTTCAAGC
ACACAAATCATGGTGAAGACCAACATGTATCATAATGAAAAGGTGAACTTTCATGTTGAATGTAAAGACT
ATGTAAAAAAGGCAAAGGTAAAGATCAACCCAGTGCAACAGAGCCGGCCCTTGTTGAGCCAGATTCACAC
AGATGCAGCAAAGGAGAACACCTGCTACTGTGGTGCAGTGGCAAAGAGACAAGAGAAAAAAGGGATGGAG
CCTCTTCAAGGTCATGCCACTCCCGCTTTGCCTTTTAAAGAAACCCAGGAACTATTACTAAGTCCCCTGC
CCCAGGAAGGTCCTGGGTCACTTGCAGCAGGAGAGAGCAGCAGTCTTTCTGCCAGTACATCAGTCTCAGA
TTCATCCCAGAAAAAAGAAGAGCACAATTATTCTCTTTTTGTCTCCGACAACTTGGGTGAACAGCCAACT
AAATGCAGTCCTGAAGAAGATGAGGAGGACGAGGAGGATGTTGATGATGAGGACCATGATGAAGGATTCG
GCAGTGAGCATGAACTGTCTGAAAATGAGGAGGAGGAAGAAGAGGAAGAGGATTATGAAGATGACAAGGA
TGATGATATTAGTGATACTTTCTCTGAACCAGGTATTATAATGCTTGCAAGCTTACCAGACTGA

Translation (417 aa):
MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIEN
LESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLA
QLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSS
TQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGME
PLQGHATPALPFKETQELLLSPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPT
KCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGIIMLASLPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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