NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58432.1 Public Homo sapiens 16 POLR3E 24 110 108 CCDS HistoryNCBI Gene:55718Re-query CCDS DB by CCDS ID:58432.1Re-query CCDS DB by GeneID:55718See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000564209.5 ENSP00000456967.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564209.5Link to Ensembl Protein Viewer:ENSP00000456967.1Re-query CCDS DB by Nucleotide ID:ENST00000564209Re-query CCDS DB by Protein ID:ENSP00000456967
Original member Current member NCBI NM_001258033.2 NP_001244962.1 Accepted alive Link to Nucleotide Sequence:NM_001258033.2Link to Protein Sequence:NP_001244962.1Re-query CCDS DB by Nucleotide ID:NM_001258033Re-query CCDS DB by Protein ID:NP_001244962Link to BLAST:NP_001244962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244962.1 687 Q9NVU0-4 687 100% 0 0

Chromosomal Locations for CCDS 58432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22302969 22303004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22305156 22305206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22308148 22308225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22308925 22309040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22309428 22309510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22313620 22313727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22314079 22314128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22315089 22315208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316601 22316686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22316995 22317039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22317115 22317206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22318826 22318946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22322850 22322931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324354 22324413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22324503 22324660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325205 22325266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22325761 22326278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22328510 22328587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22332123 22332185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22333644 22333700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGGCCAATGAAGAGGATGACCCAGTTGTACAGGAGATCGATGTGTACTTGGCCAAGAGTCTGGCGGAAA
AG
CTGTATCTATTTCAGTACCCTGTGCGTCCAGCCTCGATGACCTACGATGACATTCCGCACCTCTCAGC
C
AAGATCAAGCCCAAGCAGCAGAAGGTAGAGCTTGAGATGGCCATCGACACCCTGAACCCCAACTATTGC
CGC
AGCAAAGGGGAGCAGATTGCGCTGAACGTGGACGGGGCCTGCGCCGACGAGACCAGCACGTATTCCT
C
G
AAGCTGATGGACAAGCAGACCTTCTGCTCTTCCCAGACCACCAGTAACACATCCCGTTATGCCGCTGC
A
CTCTACAGGCAAGGTGAGCTCCACCTGACACCTTTACATGGCATCCTGCAGCTGCGGCCCAGCTTCTCC
TAC
CTGGATAAGGCTGACGCCAAGCACCGGGAGAGGGAGGCGGCCAACGAGGCAGGGGACTCTTCACAGG
AT
GAGGCGGAAGACGATGTTAAGCAGATCACGGTGCGGTTCTCCCGGCCGGAGTCAGAGCAGGCCCGCCA
G
CGCCGTGTGCAGTCCTATGAGTTCCTGCAGAAGAAGCACGCAGAGGAGCCCTGGGTCCACCTGCATTAC
TAT
GGCCTGAGGGACAGTCGCTCTGAGCATGAGCGTCAGTACCTGCTGTGCCCCGGCTCAAGCGGGGTGG
AG
AACACGGAGCTCGTCAAGTCACCCAGTGAGTACCTGATGATGCTGATGCCACCCAGCCAGGAGGAGGA
G
AAAGACAAGCCTGTGGCCCCCAGCAACGTCCTGTCGATGGCCCAGCTGCGCACGCTGCCCCTGGCCGAT
CAG
ATCAAGATCCTGATGAAGAATGTGAAGGTCATGCCTTTTGCCAACTTGATGAGCCTCCTGGGCCCCT
CC
ATCGATTCCGTGGCTGTTCTGCGGGGCATCCAGAAGGTGGCGATGTTGGTCCAAGGGAACTGGGTGGT
G
AAGAGTGACATCCTATACCCCAAGGACTCGTCCAGCCCTCACAGCGGCGTGCCTGCTGAGGTGCTCTGC
AGG
GGCCGAGACTTCGTTATGTGGAAGTTCACGCAGAGCCGCTGGGTGGTTAGGAAAGAGGTGGCAACCG
TG
ACCAAACTCTGCGCCGAGGATGTGAAGGACTTCCTGGAGCACATGGCCGTGGTGAGGATCAACAAAGG
C
TGGGAGTTCATTCTGCCTTATGATGGGGAGTTCATCAAGAAGCACCCGGATGTGGTCCAGCGGCAGCAC
ATG
CTGTGGACGGGTATCCAGGCCAAACTGGAAAAAGTCTATAATCTTGTAAAGGAAACCATGCCAAAGA
AG
CCGGATGCACAATCAGGGCCTGCCGGGCTGGTCTGTGGGGACCAGCGGATCCAAGTAGCCAAAACCAA
G
GCCCAGCAGAACCACGCGTTGCTGGAGCGGGAGCTGCAGCGGCGGAAGGAGCAGCTGCGGGTGCCTGCG
GTC
CCGCCCGGTGTGCGGATCAAGGAGGAGCCCGTGAGCGAGGAGGGCGAGGAGGACGAGGAGCAGGAGG
CG
GAGGAGGAGCCCATGGACACTTCCCCCAGCGGCCTCCACAGCAAGCTGGCCAACGGGCTGCCTCTCGG
G
CGGGCTGCGGGCACAGACAGCTTCAACGGGCACCCGCCCCAGGGCTGCGCCAGCACCCCTGTGGCTCGG
GAA
CTGAAGGCCTTCGTGGAGGCCACCTTTCAGAGACAGTTTGTGCTCACGCTGAGCGAACTCAAGCGCC
TC
TTCAATCTGCACTTGGCCAGCCTGCCCCCCGGCCACACACTCTTCAGCGGCATCTCGGACCGCATGCT
A
CAGGACACGGTGCTGGCCGCCGGTTGCAAGCAGATACTGGTGCCTTTTCCCCCCCAGACTGCTGCTTCC
CCG
GATGAGCAGAAGGTGTTTGCCCTCTGGGAGTCTGGAGACATGAGTGATCAGTCTCGGTTGACTCAAG
AG
TGTGGAGAAGATCTCAGTAAACAGGAGGTGGATAAAGTACTAAAGGACTGCTGTGTAAGCTATGGTGG
C
ATGTGGTACCTTAAAGGGACAGTACAGTCTTGA


Translation (687 aa):
MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEMAIDTLNPNYC
R
SKGEQIALNVDGACADETSTYS
SKLMDKQTFCSSQTTSNTSRYAAALYRQGELHLTPLHGILQLRPSFS
Y
LDKADAKHREREAANE
AGDSSQDEAEDDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHY
Y
GLR
DSRSEHERQYLLCPGSSGVENTELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLAD
Q
IKILMKN
VKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLC
R
GRDFV
MWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
M
LWTGIQA
KLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPA
V
PPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVAR
E
LKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVP
FPPQTAAS
P
DEQKVFALWESGDMSDQ
SRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser