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Report for CCDS47922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47922.1 Public Homo sapiens 8 SLA 24 110 108 CCDS HistoryNCBI Gene:6503Re-query CCDS DB by CCDS ID:47922.1Re-query CCDS DB by GeneID:6503See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47922.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395352.7 ENSP00000378759.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395352.7Link to Ensembl Protein Viewer:ENSP00000378759.3Re-query CCDS DB by Nucleotide ID:ENST00000395352Re-query CCDS DB by Protein ID:ENSP00000378759
Original member Current member NCBI NM_001045557.3 NP_001039022.2 Accepted alive Link to Nucleotide Sequence:NM_001045557.3Link to Protein Sequence:NP_001039022.2Re-query CCDS DB by Nucleotide ID:NM_001045557Re-query CCDS DB by Protein ID:NP_001039022Link to BLAST:NP_001039022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001039022.2 293 Q13239-3 293 100% 0 0

Chromosomal Locations for CCDS 47922.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 133038524 133038737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133039998 133040130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133044984 133045115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133047830 133047933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133049902 133049988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133050816 133050915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133060100 133060200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133102553 133102563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCTCCACCGGCTCTGGGCATCACCAGCGGCCCCAGGGAAAAAGAAAGAAATGGGAAACAGCATGAAAT
CCACCCCTGCGCCTGCCGAGAGGCCCCTGCCCAACCCGGAGGGACTGGATAGCGACTTCCTTGCCGTGCT
AAGTGACTACCCGTCTCCTGACATCAGCCCCCCGATATTCCGCCGAGGGGAGAAACTGCGTGTGATTTCT
GATGAAGGGGGCTGGTGGAAAGCTATTTCTCTTAGCACTGGTCGAGAGAGTTACATCCCTGGAATATGTG
TGGCCAGAGTTTACCATGGCTGGCTGTTTGAGGGCCTGGGCAGAGACAAGGCCGAGGAGCTGCTGCAGCT
GCCAGACACAAAGGTCGGCTCCTTCATGATCAGAGAGAGTGAGACCAAGAAAGGGTTTTACTCACTGTCG
GTGAGACACAGGCAGGTAAAGCATTACCGCATTTTCCGTCTGCCCAACAACTGGTACTACATTTCCCCGA
GGCTCACCTTCCAGTGCCTGGAGGACCTGGTGAACCACTATTCTGAGGTGGCTGATGGCCTGTGCTGTGT
GCTCACCACGCCCTGCCTGACACAAAGCACGGCTGCCCCAGCAGTGAGGGCCTCCAGCTCACCTGTCACC
TTGCGTCAGAAGACTGTGGACTGGAGGAGAGTGTCCAGACTGCAGGAGGACCCCGAGGGAACAGAGAACC
CGCTTGGGGTAGACGAGTCCCTTTTCAGCTATGGCCTTCGAGAGAGCATTGCCTCTTACCTGTCCCTGAC
CAGTGAGGACAACACCTCCTTTGATCGAAAGAAGAAAAGCATCTCCCTGATGTATGGTGGCAGCAAGAGA
AAGAGCTCATTCTTCTCATCACCACCTTACTTTGAGGACTAG

Translation (293 aa):
MLHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVIS
DEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFMIRESETKKGFYSLS
VRHRQVKHYRIFRLPNNWYYISPRLTFQCLEDLVNHYSEVADGLCCVLTTPCLTQSTAAPAVRASSSPVT
LRQKTVDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYLSLTSEDNTSFDRKKKSISLMYGGSKR
KSSFFSSPPYFED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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