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Report for CCDS860.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
860.1 |
Public |
Homo sapiens |
1 |
MAGI3 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:260425](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:860.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:260425](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 860.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000369611.4 |
ENSP00000358624.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000369611.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000358624.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000369611](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000358624](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000369615.5 |
ENSP00000358628.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000369615.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000358628.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000369615](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000358628](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_152900.3 |
NP_690864.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_152900.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_690864.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_152900](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_690864](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_690864.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_690864.2 |
1125 |
Q5TCQ9-3 |
1125 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 860.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3378 nt): ATGTCGAAGACGCTGAAGAAGAAGAAGCACTGGCTCAGCAAGGTGCAGGAGTGCGCCGTGTCCTGGGCCG GGCCCCCGGGCGACTTCGGCGCGGAGATCCGCGGTGGCGCGGAGCGTGGCGAGTTCCCCTACCTGGGGCG GCTCCGCGAGGAGCCCGGCGGGGGCACCTGCTGCGTCGTCTCGGGCAAGGCGCCCAGCCCAGGCGATGTG CTGCTGGAGGTAAACGGGACGCCTGTCAGCGGGCTCACCAACCGGGACACCCTGGCTGTCATCCGCCACT TCCGCGAGCCCATCCGTCTCAAGACTGTGAAACCAGGCAAAGTCATTAATAAAGATTTGCGGCATTACCT AAGTCTTCAGTTTCAAAAAGGATCAATTGACCACAAACTGCAGCAAGTGATCAGAGATAATCTCTACTTG AGAACCATTCCATGCACTACAAGGGCCCCCAGGGATGGAGAAGTACCAGGAGTGGATTATAATTTCATTT CCGTTGAACAGTTCAAAGCACTGGAAGAGAGTGGAGCATTGTTAGAAAGTGGGACATATGATGGAAACTT CTATGGAACTCCCAAGCCTCCAGCAGAACCCAGCCCTTTTCAGCCAGATCCAGTTGATCAAGTCCTCTTT GATAATGAGTTTGATGCAGAATCTCAAAGAAAACGAACGACATCTGTCAGCAAGATGGAAAGAATGGATA GCTCTCTTCCTGAAGAGGAAGAAGATGAGGACAAGGAAGCTATTAATGGCAGTGGAAACGCAGAAAACAG AGAGAGGCATTCTGAGTCATCTGACTGGATGAAGACTGTTCCAAGTTACAACCAAACAAATAGCTCCATG GACTTTAGAAATTATATGATGAGAGATGAGACTCTGGAACCACTGCCCAAAAACTGGGAAATGGCCTACA CTGACACAGGGATGATCTACTTCATTGACCACAATACCAAGACAACCACCTGGTTGGATCCTCGTCTTTG TAAGAAAGCCAAAGCCCCTGAAGACTGTGAAGATGGAGAGCTTCCTTATGGCTGGGAGAAAATAGAGGAC CCTCAGTATGGGACATACTATGTTGATCACCTTAACCAGAAAACCCAGTTTGAAAATCCAGTGGAGGAAG CCAAAAGGAAAAAGCAGTTAGGACAGGTTGAAATTGGGTCTTCAAAACCAGATATGGAAAAATCACACTT CACAAGAGATCCATCCCAGCTTAAAGGTGTCCTTGTTCGAGCATCACTGAAAAAAAGCACAATGGGATTT GGTTTTACTATTATTGGTGGAGATAGACCTGATGAGTTCCTACAAGTGAAAAATGTGCTGAAAGATGGTC CCGCAGCTCAGGATGGGAAAATTGCACCAGGCGATGTTATTGTAGACATCAATGGCAACTGTGTCCTCGG TCACACTCATGCAGATGTTGTCCAGATGTTTCAATTGGTACCTGTCAATCAGTATGTAAACCTCACTTTA TGTCGTGGTTATCCACTTCCTGATGACAGTGAAGATCCTGTTGTGGACATTGTTGCTGCTACCCCTGTCA TCAATGGACAGTCATTAACCAAGGGAGAGACTTGCATGAATCCTCAGGATTTTAAGCCAGGAGCAATGGT TCTGGAGCAGAATGGAAAATCGGGACACACTTTGACTGGTGATGGTCTCAATGGACCATCAGATGCAAGT GAGCAGAGAGTATCCATGGCATCGTCAGGCAGCTCCCAGCCTGAACTAGTGACTATCCCTTTGATTAAGG GCCCTAAAGGGTTTGGGTTTGCAATTGCTGACAGCCCTACTGGACAGAAGGTGAAAATGATACTGGATAG TCAGTGGTGTCAAGGCCTTCAGAAAGGAGATATAATTAAGGAAATATACCATCAAAATGTGCAGAATTTA ACACATCTCCAAGTGGTAGAGGTGCTAAAGCAGTTTCCAGTAGGTGCTGATGTACCATTGCTTATCTTAA GAGGAGGTCCTCCTTCACCAACCAAAACTGCCAAAATGAAAACAGATAAAAAGGAAAATGCAGGAAGTTT GGAGGCCATAAATGAGCCTATTCCTCAGCCTATGCCTTTTCCACCGAGCATTATCAGGTCAGGATCCCCA AAATTGGATCCTTCTGAGGTCTACCTGAAATCTAAGACTTTATATGAAGATAAACCACCAAACACCAAAG ATTTGGATGTTTTTCTTCGAAAACAAGAGTCAGGGTTTGGCTTCAGGGTGCTAGGAGGAGATGGACCTGA CCAGTCTATATATATTGGGGCTATTATTCCCCTGGGAGCAGCTGAGAAAGATGGTCGGCTCCGCGCAGCT GATGAACTAATGTGCATTGATGGAATTCCTGTTAAAGGGAAATCACACAAACAAGTCTTGGACCTCATGA CAACTGCTGCTCGAAATGGCCATGTGTTACTAACTGTCAGACGGAAGATCTTCTATGGAGAAAAACAACC CGAGGACGACAGCTCTCAGGCCTTCATTTCAACACAGAATGGATCTCCCCGCCTGAACCGGGCAGAGGTC CCAGCCAGGCCTGCACCCCAGGAGCCCTATGATGTTGTCTTGCAACGAAAAGAAAATGAAGGATTTGGCT TTGTCATCCTCACCTCCAAAAACAAACCACCTCCAGGAGTTATTCCTCATAAAATTGGCCGAGTCATAGA AGGAAGTCCGGCTGACCGCTGTGGAAAACTGAAAGTTGGAGATCATATCTCTGCAGTGAATGGGCAGTCC ATTGTTGAACTGTCTCATGATAACATTGTTCAGCTGATCAAAGATGCTGGTGTCACCGTCACACTAACGG TCATTGCTGAAGAAGAGCATCATGGTCCACCATCAGGAACAAACTCAGCCAGGCAAAGCCCAGCCCTGCA GCACAGGCCCATGGGACAGTCACAGGCCAACCACATACCTGGGGACAGAAGTGCCCTAGAAGGTGAAATT GGAAAAGATGTCTCCACTTCTTACAGACATTCTTGGTCAGACCACAAGCACCTTGCACAGCCTGACACCG CAGTAATTTCAGTTGTAGGCAGTCGGCACAATCAGAACCTTGGTTGTTATCCAGTAGAGCTGGAGAGAGG CCCCCGGGGCTTTGGATTCAGCCTCCGAGGGGGGAAGGAGTACAACATGGGGCTGTTCATCCTTCGTCTT GCTGAAGATGGTCCTGCCATCAAAGATGGCAGAATTCATGTTGGTGACCAGATTGTTGAAATCAATGGGG AACCTACACAAGGAATCACACATACTCGAGCAATTGAGCTCATTCAGGCTGGTGGAAATAAAGTTCTTCT TCTTTTGAGGCCAGGAACTGGCTTGATACCTGACCATGGTTTGGCTCCTTCCGGTCTGTGCTCCTACGTG AAACCCGAGCAACATTAA
Translation (1125 aa): MSKTLKKKKHWLSKVQECAVSWAGPPGDFGAEIRGGAERGEFPYLGRLREEPGGGTCCVVSGKAPSPGDV LLEVNGTPVSGLTNRDTLAVIRHFREPIRLKTVKPGKVINKDLRHYLSLQFQKGSIDHKLQQVIRDNLYL RTIPCTTRAPRDGEVPGVDYNFISVEQFKALEESGALLESGTYDGNFYGTPKPPAEPSPFQPDPVDQVLF DNEFDAESQRKRTTSVSKMERMDSSLPEEEEDEDKEAINGSGNAENRERHSESSDWMKTVPSYNQTNSSM DFRNYMMRDETLEPLPKNWEMAYTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDGELPYGWEKIED PQYGTYYVDHLNQKTQFENPVEEAKRKKQLGQVEIGSSKPDMEKSHFTRDPSQLKGVLVRASLKKSTMGF GFTIIGGDRPDEFLQVKNVLKDGPAAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVNLTL CRGYPLPDDSEDPVVDIVAATPVINGQSLTKGETCMNPQDFKPGAMVLEQNGKSGHTLTGDGLNGPSDAS EQRVSMASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNL THLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMKTDKKENAGSLEAINEPIPQPMPFPPSIIRSGSP KLDPSEVYLKSKTLYEDKPPNTKDLDVFLRKQESGFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAA DELMCIDGIPVKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSSQAFISTQNGSPRLNRAEV PARPAPQEPYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGSPADRCGKLKVGDHISAVNGQS IVELSHDNIVQLIKDAGVTVTLTVIAEEEHHGPPSGTNSARQSPALQHRPMGQSQANHIPGDRSALEGEI GKDVSTSYRHSWSDHKHLAQPDTAVISVVGSRHNQNLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRL AEDGPAIKDGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTGLIPDHGLAPSGLCSYV KPEQH
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