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Report for CCDS34854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34854.1 Public Homo sapiens 8 PSD3 24 110 108 CCDS HistoryNCBI Gene:23362Re-query CCDS DB by CCDS ID:34854.1Re-query CCDS DB by GeneID:23362See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34854.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286485.12 ENSP00000286485.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286485.12Link to Ensembl Protein Viewer:ENSP00000286485.8Re-query CCDS DB by Nucleotide ID:ENST00000286485Re-query CCDS DB by Protein ID:ENSP00000286485
Original member Current member NCBI NM_206909.3 NP_996792.1 Accepted alive Link to Nucleotide Sequence:NM_206909.3Link to Protein Sequence:NP_996792.1Re-query CCDS DB by Nucleotide ID:NM_206909Re-query CCDS DB by Protein ID:NP_996792Link to BLAST:NP_996792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996792.1 513 Q9NYI0-3 513 100% 0 0

Chromosomal Locations for CCDS 34854.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18535743 18535958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18556209 18556352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18572528 18572672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18575128 18575285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18600364 18600434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18632613 18632806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18655642 18655685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18765449 18765538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18799295 18799353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18801270 18801382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18804522 18804602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18804704 18804898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18808755 18808786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGGCTCTTCTTGGTGTCTGTATGGTTGCTGCAATGCTGGGGTGAAAACAACACGGCTAGAAGCTCATT
CT
GAAATGGGGAGCACTGAAATTTTGGAAAAGGAGACCCCAGAAAATCTCAGTAATGGTACCAGCAGCAA
T
GTGGAAGCAGCCAAAAGGTTGGCCAAACGCCTTTATCAGCTGGACAGATTCAAAAGATCAGATGTTGCA
AAA
CACCTTGGCAAGAACAACGAATTTAGCAAACTAGTTGCAGAAGAATATCTGAAGTTTTTTGATTTTA
CA
GGAATGACGCTGGATCAGTCACTCAGGTATTTCTTTAAAGCATTCTCTCTTGTGGGAGAAACTCAAGA
A
CGAGAGAGAGTTTTAATACACTTCTCCAATAGATATTTTTATTGTAACCCAGATACCATTGCTTCACAA
G
AT
GGAGTCCATTGCCTTACCTGTGCAATAATGCTTCTTAATACCGATCTACATGGCCACAATATTGGAA
AG
AAGATGACCTGTCAGGAGTTCATTGCAAATCTGCAAGGGGTAAATGAGGGTGTTGATTTCTCCAAGGA
T
CTGCTGAAAGCTCTGTACAACTCAATCAAGAATGAGAAGCTTGAATGGGCAGTAGATGATGAAGAGAAA
AAA
AAGTCTCCCTCAGAAAGTACTGAGGAGAAAGCTAACGGAACACATCCAAAGACCATCAGTCGTATTG
GA
AGTACTACTAACCCATTTTTGGACATTCCTCATGATCCAAATGCTGCTGTGTACAAAAGTGGATTCTT
G
GCTCGGAAAATTCATGCAGATATGGATGGAAAGAAGACTCCAAGAGGAAAACGAGGATGGAAAACCTTT
TAT
GCTGTACTGAAGGGAACAGTTCTTTACTTGCAAAAGGATGAATACAAGCCAGAAAAGGCCTTGTCTG
AA
GAGGACTTGAAAAACGCTGTGAGTGTGCACCACGCATTGGCATCCAAGGCCACGGACTATGAGAAGAA
A
CCAAACGTGTTTAAACTTAAAACTGCCGACTGGAGGGTCTTGCTTTTTCAAACTCAGAGCCCAGAGGAA
ATG
CAAGGGTGGATAAACAAAATCAATTGTGTGGCAGCTGTATTTTCTGCACCACCATTTCCAGCAGCAA
TC
GGCTCTCAGAAGAAGTTTAGCCGCCCACTTCTGCCTGCCACTACAACAAAACTGTCTCAGGAGGAGCA
A
CTGAAGTCACATGAAAGTAAGCTGAAGCAGATCACCACCGAGCTGGCCGAGCACCGCTCATATCCCCCC
GAC
AAGAAGGTCAAAGCCAAGGACGTCGATGAGTACAAACTGAAAGACCACTATCTGGAGTTTGAGAAAA
CC
CGCTATGAAATGTATGTCAGCATTCTCAAGGAAGGAGGCAAAGAGCTACTGAGTAACGATGAAAGCGA
G
GCTGCAGGACTGAAGAAGTCGCACTCGAGTCCTTCGCTGAACCCGGATACTTCTCCAATCACTGCCAAA
GTC
AAGCGTAACGTGTCAGAGAGGAAGGATCACCGACCTGAAACACCAAGCATTAAGCAAAAAGTTACTT
AG


Translation (513 aa):
MGSSWCLYGCCNAGVKTTRLEAHSEMGSTEILEKETPENLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVA
K
HLGK
NNEFSKLVAEEYLKFFDFTGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIASQ
D
GVHCLTCAIMLLNTDLHGHNIGKKMTCQEFIANLQGVNEGVDFSKDLLKALYNSIKNEKLEWAVDDEEK
K
KSPSESTEEKANGTHPKTISRIGSTTNPFLDIPHDPNAAVYKSGFLARKIHADMDGKK
TPRGKRGWKTF
Y
AVLKGTVLYLQK
DEYKPEKALSEEDLKNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEE
M
QGWINKINCVAAVFSAPPFPAAIGSQKKFSRPLLPATTTKLSQ
EEQLKSHESKLKQITTELAEHRSYPP
D
KKVKAKDVDEYKLKDHYLEFE
KTRYEMYVSILKEGGKELLSNDESEAAGLKKSHSSPSLNPDTSPITAK
V
KRNVSERKDHRPETPSIKQKVT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser