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Report for CCDS10744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10744.1 Public Homo sapiens 16 SNX20 24 110 108 CCDS HistoryNCBI Gene:124460Re-query CCDS DB by CCDS ID:10744.1Re-query CCDS DB by GeneID:124460See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300590.7 ENSP00000300590.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300590.7Link to Ensembl Protein Viewer:ENSP00000300590.3Re-query CCDS DB by Nucleotide ID:ENST00000300590Re-query CCDS DB by Protein ID:ENSP00000300590
Original member Current member EBI ENST00000568993.5 ENSP00000454863.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568993.5Link to Ensembl Protein Viewer:ENSP00000454863.1Re-query CCDS DB by Nucleotide ID:ENST00000568993Re-query CCDS DB by Protein ID:ENSP00000454863
Original member Current member NCBI NM_153337.3 NP_699168.1 Accepted alive Link to Nucleotide Sequence:NM_153337.3Link to Protein Sequence:NP_699168.1Re-query CCDS DB by Nucleotide ID:NM_153337Re-query CCDS DB by Protein ID:NP_699168Link to BLAST:NP_699168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699168.1 129 Q7Z614-3 129 100% 0 0

Chromosomal Locations for CCDS 10744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 50669041 50669148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50675770 50675921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 50677397 50677526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCAAGTCCAGAGCACCCTGGGAGCCCTGGCTGCATGGGACCCATAACCCAGTGCACGGCAAGGACCC
AGCAGGAAGCACCAGCCACTGGCCCCGACCTCCCGCACCCAGGACCTGACGGGCACTTAGACACACACAG
TGGCCTGAGCTCCAACTCCAGCATGACCACGCGGGAGCTTCAGCAGTACTGGCAGAACCAGAAATGCCGC
TGGAAGCACGTCAAACTGCTCTTTGAGATCGCTTCAGCTCGCATCGAGGAGAGAAAAGTCTCTAAGTTTG
TGATGGGGAAATCAAGGCCTGGAGAGATGACTTATCCAGGGTCACGTGGCGAGACAGGGACAGCACCAGA
ACCAGACCCGAGATGTCCACGTCAAAGTGACATGCTCTGA

Translation (129 aa):
MASPEHPGSPGCMGPITQCTARTQQEAPATGPDLPHPGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCR
WKHVKLLFEIASARIEERKVSKFVMGKSRPGEMTYPGSRGETGTAPEPDPRCPRQSDML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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