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Report for CCDS87483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87483.1 Public Homo sapiens 7 SNX13 24 110 108 CCDS HistoryNCBI Gene:23161Re-query CCDS DB by CCDS ID:87483.1Re-query CCDS DB by GeneID:23161See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409604.1 ENSP00000386639.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409604.1Link to Ensembl Protein Viewer:ENSP00000386639.1Re-query CCDS DB by Nucleotide ID:ENST00000409604Re-query CCDS DB by Protein ID:ENSP00000386639
Original member Current member NCBI NM_001350870.2 NP_001337799.1 Accepted alive Link to Nucleotide Sequence:NM_001350870.2Link to Protein Sequence:NP_001337799.1Re-query CCDS DB by Nucleotide ID:NM_001350870Re-query CCDS DB by Protein ID:NP_001337799Link to BLAST:NP_001337799.1

Chromosomal Locations for CCDS 87483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 17882814 17882943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17890363 17890484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17891546 17891635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17893332 17893434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17897334 17897446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17940284 17940295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGTTAACTGAGGCCAGTCTATCCATATGGGGATGGGGAAGCCTTGGCATTGTCCTTTTTCTGATAACCT
TTGGACCCTTTGTAATATTTTATTTGACATTTTATATCCTCTGCTTTGTGGGTGGGGGTTTAGTGGTTAC
TCTCCTGTTTGGAAAAACAAACTCAGAGAAGTACCTAGAACAGTGTGAACACTCATTTCTTCCTCCAACA
TCACCTGGGGTTCCTAAGTGCTTAGAAGAAATGAAACGGGAAGCCAGGACTATTAAGATTGATAGAAGAT
TGACGGGTGCCAATATAATTGATGAACCTCTCCAGCAAGTTATCCAGTTTTCCTTGAGGGATTATGTCCA
GTATTGGTATTATACACTAAGCGATGATGAATCTTTTCTTCTTGAAATTAGGCAGACTCTTCAAAACGCA
CTCATTCAGTTTGCTACTAGAGTCTCGCCCTGTCGCCCAGGCTGGAGTACAATGGCGCAATCTCGGCTCA
CTGCAACCTCCGCTTCCTGGAACCCTGTTTTGTTTAACAAAACCTTGGTCTCACTGTGTCTCCTAGAATA
TGTAATTTAA

Translation (189 aa):
MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLTFYILCFVGGGLVVTLLFGKTNSEKYLEQCEHSFLPPT
SPGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNA
LIQFATRVSPCRPGWSTMAQSRLTATSASWNPVLFNKTLVSLCLLEYVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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