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Report for CCDS55415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55415.1 Public Homo sapiens X PPP1R3F 24 110 108 CCDS HistoryNCBI Gene:89801Re-query CCDS DB by CCDS ID:55415.1Re-query CCDS DB by GeneID:89801See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376188.1 ENSP00000365359.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376188.1Link to Ensembl Protein Viewer:ENSP00000365359.1Re-query CCDS DB by Nucleotide ID:ENST00000376188Re-query CCDS DB by Protein ID:ENSP00000365359
Original member Current member EBI ENST00000495799.5 ENSP00000417535.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495799.5Link to Ensembl Protein Viewer:ENSP00000417535.1Re-query CCDS DB by Nucleotide ID:ENST00000495799Re-query CCDS DB by Protein ID:ENSP00000417535
Original member Current member EBI ENST00000466508.5 ENSP00000420687.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466508.5Link to Ensembl Protein Viewer:ENSP00000420687.1Re-query CCDS DB by Nucleotide ID:ENST00000466508Re-query CCDS DB by Protein ID:ENSP00000420687
Original member Current member NCBI NM_001184745.2 NP_001171674.1 Accepted alive Link to Nucleotide Sequence:NM_001184745.2Link to Protein Sequence:NP_001171674.1Re-query CCDS DB by Nucleotide ID:NM_001184745Re-query CCDS DB by Protein ID:NP_001171674Link to BLAST:NP_001171674.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171674.1 453 Q6ZSY5-2 453 100% 0 0

Chromosomal Locations for CCDS 55415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49281437 49281461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49281984 49282063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49285834 49287090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGATGATAACACCTTTGCCATGGAGCATCCTGATGTCCAGGAGTCAGTGGGTCCACTGGTAGCCCCCA
CCCCTCTCCGTCCATGGCCCCAGATGACACTTCAGGTTTCTGACGTTCCGATGACTGGCAACCCCGCAGA
AGAAGGTGATGTCCCCAGAAGCAGTCCACCTGTGGCTTTTACAGAGGTCCTCCAGGCACCGGCCATCAGG
ATTCCCCCCTCCTCCCCTCTCTGTGGCCTGGGTGGCTCCCCCAGAGACCAGGCCTCAGGGCCCGATGCGA
GCGAGGGGGCCACCGGGCCTTTCCTGGAGCCCAGTCAGCAGCAGGCAGAGGCCACATGGGGAGTATCGAG
TGAGAATGGAGGGGGGCTGGAGGCTGTGAGTGGGTCAGAGGAGCTGCTCGGTGAGGACACCATCGACCAG
GAGCTGGAGCAGCTCTACCTGTCTCACCTGAGCCGCCTACGGGCTGCTGTGGCTGCGGGTGGGGCAGGGG
GTGGTGGGGAGGGCTCCACAGATGGAGGGATGTCCCCCAGCCATCCCCTGGGCATACTGACGGACCGCGA
CCTGATCTTGAAGTGGCCTGGCCCTGAGCGGGCCCTGAACAGCGCCCTGGCTGAGGAGATCACGCTGCAC
TATGCCCGGCTGGGGCGTGGCGTGGAGCTCATCAAGGACACCGAAGACCCTGATGATGAAGGGGAGGGTG
AAGAGGGGCTCTCTGTCACACCCTCCAGCCCAGAAGGGGACAGCCCCAAGGAATCGCCTCCAGAAATCCT
CTCCGGGGCCCGTTCTGTGGTAGCCACGATGGGAGATGTGTGGCTCCCATGGGCAGAGGGCTCAGGATGT
GACGGCCCTGTGGTTCTGGGTACAGAGGGTCAGTTCATTGGGGATCCTGAGAAAGGGATGGGCAAGGACA
CCAGCTCTTTGCACATGAATAGGGTGATAGCTGGGGTGACTGAGTCCCTGGGGGAGGCCGGGACAGAAGC
CCAGATAGAGGTCACCAGTGAGTGGGCAGGCAGCTTGGATCCCATATCTGGCAAGGAGCCAGCCTCTCCC
GTCCTTCTGCAGGGGCAAAATCCCACCCTCCTCAGTCCCTTGGGGGCCGAAGTCTGTCTCTCTAGTGTAG
CCAGGCCTCATGTGAGCTCCCAGGATGAAAAGGATGCAGGCCCAAGCCTTGAACCCCCAAAGAAGTCTCC
CACCCTAGCAGTCCCTGCAGAATGTGTGTGTGCACTGCCTCCTCAGCTCCGGGGGCCCTTGACCCAGACT
CTGGGGGTCCTGGCCGGGCTAGTGGTGGTCCCTGTGGCTCTGAACAGCGGTGTGTCCCTCCTGGTGCTTG
CGCTGTGCCTCTCTCTGGCTTGGTTCTCATAG

Translation (453 aa):
MDDNTFAMEHPDVQESVGPLVAPTPLRPWPQMTLQVSDVPMTGNPAEEGDVPRSSPPVAFTEVLQAPAIR
IPPSSPLCGLGGSPRDQASGPDASEGATGPFLEPSQQQAEATWGVSSENGGGLEAVSGSEELLGEDTIDQ
ELEQLYLSHLSRLRAAVAAGGAGGGGEGSTDGGMSPSHPLGILTDRDLILKWPGPERALNSALAEEITLH
YARLGRGVELIKDTEDPDDEGEGEEGLSVTPSSPEGDSPKESPPEILSGARSVVATMGDVWLPWAEGSGC
DGPVVLGTEGQFIGDPEKGMGKDTSSLHMNRVIAGVTESLGEAGTEAQIEVTSEWAGSLDPISGKEPASP
VLLQGQNPTLLSPLGAEVCLSSVARPHVSSQDEKDAGPSLEPPKKSPTLAVPAECVCALPPQLRGPLTQT
LGVLAGLVVVPVALNSGVSLLVLALCLSLAWFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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