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Report for CCDS59075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59075.1 Public Homo sapiens 7 PNPLA8 24 110 108 CCDS HistoryNCBI Gene:50640Re-query CCDS DB by CCDS ID:59075.1Re-query CCDS DB by GeneID:50640See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59075.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000453144.5 ENSP00000387789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453144.5Link to Ensembl Protein Viewer:ENSP00000387789.1Re-query CCDS DB by Nucleotide ID:ENST00000453144Re-query CCDS DB by Protein ID:ENSP00000387789
Original member Current member NCBI NM_001256010.3 NP_001242939.1 Accepted alive Link to Nucleotide Sequence:NM_001256010.3Link to Protein Sequence:NP_001242939.1Re-query CCDS DB by Nucleotide ID:NM_001256010Re-query CCDS DB by Protein ID:NP_001242939Link to BLAST:NP_001242939.1
Original member Current member NCBI NM_001256011.3 NP_001242940.1 Accepted alive Link to Nucleotide Sequence:NM_001256011.3Link to Protein Sequence:NP_001242940.1Re-query CCDS DB by Nucleotide ID:NM_001256011Re-query CCDS DB by Protein ID:NP_001242940Link to BLAST:NP_001242940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242939.1 682 Q9NP80-3 682 100% 0 0
NP_001242940.1 682 Q9NP80-3 682 100% 0 0

Chromosomal Locations for CCDS 59075.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108472401 108472675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108479184 108479379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108487759 108487953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108491410 108491467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108496584 108496755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108497483 108497577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108502491 108502642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108514144 108514293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 108514436 108515191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2049 nt):
ATGTCCCGTATTAAAAGTACTTTGAACTCTGTTTCAAAGGCTGTTTTTGGCAATCAAAATGAAATGATTT
CACGTTTAGCTCAATTTAAGCCAAGTTCCCAAATTTTAAGAAAAGTATCGGATAGTGGCTGGTTAAAACA
GAAAAACATCAAACAAGCCATCAAATCTCTGAAAAAATATAGTGACAAATCAGCAGAAAAGAGTCCTTTT
CCAGAAGAGAAAAGTCACATTATAGACAAAGAAGAAGATATAGGTAAACGCAGTCTTTTTCATTACACAA
GTTCTATAACCACAAAATTTGGAGACTCATTCTACTTTTTATCAAATCATATTAATTCATATTTCAAACG
TAAGGAAAAAATGTCTCAACAAAAGGAAAATGAACATTTCCGGGACAAATCAGAACTTGAAGATAAAAAG
GTAGAAGAGGGGAAATTAAGATCTCCAGATCCTGGCATCCTGGCTTATAAGCCAGGCTCAGAATCTGTAC
ATACGGTGGACAAGCCTACAAGTCCTTCTGCGATACCTGATGTTCTTCAAGTTTCAACTAAACAAAGTAT
TGCTAACTTTCTTTCTCGTCCCACGGAAGGTGTACAAGCTTTAGTAGGTGGTTATATTGGTGGACTTGTC
CCCAAATTAAAGTATGATTCAAAGAGTCAGTCAGAAGAACAGGAAGAGCCTGCTAAAACTGATCAGGCTG
TCAGCAAAGACAGAAATGCAGAGGAGAAAAAGCGTTTATCTCTTCAGCGAGAAAAGATTATCGCAAGGGT
GAGTATTGATAACAGGACCCGGGCATTAGTTCAGGCATTAAGAAGAACAACTGACCCAAAGCTCTGCATT
ACTAGGGTTGAAGAACTGACTTTTCATCTTCTAGAATTTCCTGAAGGAAAAGGAGTGGCTGTCAAGGAAA
GAATTATTCCATATTTATTACGACTGAGACAAATTAAGGATGAAACTCTTCAGGCTGCAGTTAGAGAAAT
TTTGGCCCTAATTGGCTATGTGGATCCAGTGAAAGGGAGAGGAATCCGAATTCTCTCAATTGATGGTGGA
GGAACAAGGGGCGTGGTTGCTCTCCAGACCCTACGAAAATTAGTTGAACTTACTCAGAAGCCAGTTCATC
AGCTCTTTGATTACATTTGTGGTGTAAGCACAGGTGCCATATTAGCTTTCATGTTGGGGTTGTTTCATAT
GCCCTTGGATGAATGTGAGGAACTTTATCGAAAATTAGGATCAGATGTATTTTCACAAAATGTCATTGTT
GGAACAGTAAAAATGAGTTGGAGCCATGCATTTTATGACAGTCAAACATGGGAAAACATTCTTAAGGATA
GGATGGGATCTGCACTGATGATTGAAACAGCAAGAAACCCCACATGTCCTAAGGTAGCTGCTGTAAGTAC
CATAGTAAATAGAGGGATAACACCCAAAGCTTTTGTGTTCAGAAACTATGGTCATTTTCCTGGAATCAAC
TCTCATTATTTGGGAGGCTGTCAGTATAAAATGTGGCAGGCCATTAGAGCCTCATCTGCTGCTCCAGGCT
ACTTTGCAGAATATGCATTGGGAAATGATCTTCATCAAGATGGAGGTTTGCTTCTGAATAACCCTTCGGC
ATTAGCTATGCATGAGTGTAAATGTCTTTGGCCAGATGTGCCGTTAGAGTGCATAGTATCCCTGGGCACT
GGACGTTATGAGAGTGATGTGAGAAACACGGTAACATACACAAGCTTGAAAACTAAACTTTCTAATGTTA
TCAACAGTGCTACAGATACAGAAGAAGTCCATATAATGCTTGATGGCCTGTTACCTCCTGACACCTATTT
TAGATTCAATCCTGTAATGTGTGAAAACATACCTCTAGATGAAAGTCGAAATGAAAAGCTGGATCAGCTG
CAGTTGGAAGGGTTGAAATACATAGAAAGAAATGAACAAAAAATGAAAAAAGTTGCAAAAATATTAAGTC
AAGAAAAAACAACTCTGCAGAAAATTAATGATTGGATAAAATTAAAAACTGATATGTATGAAGGACTTCC
ATTCTTTTCAAAATTGTGA

Translation (682 aa):
MSRIKSTLNSVSKAVFGNQNEMISRLAQFKPSSQILRKVSDSGWLKQKNIKQAIKSLKKYSDKSAEKSPF
PEEKSHIIDKEEDIGKRSLFHYTSSITTKFGDSFYFLSNHINSYFKRKEKMSQQKENEHFRDKSELEDKK
VEEGKLRSPDPGILAYKPGSESVHTVDKPTSPSAIPDVLQVSTKQSIANFLSRPTEGVQALVGGYIGGLV
PKLKYDSKSQSEEQEEPAKTDQAVSKDRNAEEKKRLSLQREKIIARVSIDNRTRALVQALRRTTDPKLCI
TRVEELTFHLLEFPEGKGVAVKERIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGG
GTRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIV
GTVKMSWSHAFYDSQTWENILKDRMGSALMIETARNPTCPKVAAVSTIVNRGITPKAFVFRNYGHFPGIN
SHYLGGCQYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGT
GRYESDVRNTVTYTSLKTKLSNVINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQL
QLEGLKYIERNEQKMKKVAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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