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Report for CCDS13085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13085.1 Public Homo sapiens 20 SLC23A2 24 110 108 CCDS HistoryNCBI Gene:9962Re-query CCDS DB by CCDS ID:13085.1Re-query CCDS DB by GeneID:9962See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338244.6 ENSP00000344322.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338244.6Link to Ensembl Protein Viewer:ENSP00000344322.1Re-query CCDS DB by Nucleotide ID:ENST00000338244Re-query CCDS DB by Protein ID:ENSP00000344322
Original member Current member EBI ENST00000379333.5 ENSP00000368637.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379333.5Link to Ensembl Protein Viewer:ENSP00000368637.1Re-query CCDS DB by Nucleotide ID:ENST00000379333Re-query CCDS DB by Protein ID:ENSP00000368637
Original member Current member NCBI NM_005116.6 NP_005107.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005116.6Link to Protein Sequence:NP_005107.4Re-query CCDS DB by Nucleotide ID:NM_005116Re-query CCDS DB by Protein ID:NP_005107Link to BLAST:NP_005107.4
Original member Current member NCBI NM_203327.2 NP_976072.1 Accepted alive Link to Nucleotide Sequence:NM_203327.2Link to Protein Sequence:NP_976072.1Re-query CCDS DB by Nucleotide ID:NM_203327Re-query CCDS DB by Protein ID:NP_976072Link to BLAST:NP_976072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005107.4 650 Q9UGH3-1 650 100% 0 0
NP_976072.1 650 Q9UGH3-1 650 100% 0 0

Chromosomal Locations for CCDS 13085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 4856972 4857204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4859289 4859384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4861948 4862085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4862778 4862907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4867770 4867875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4869906 4870053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4873936 4874092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4874576 4874696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4883642 4883823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4884753 4884823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4885821 4885909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4899555 4899712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4902442 4902558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4912880 4912978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 4932455 4932562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGATGGGTATTGGTAAGAATACCACATCCAAATCAATGGAGGCTGGAAGTTCAACAGAAGGCAAATACG
AAGACGAGGCAAAGCACCCAGCTTTCTTCACTCTTCCGGTGGTGATAAATGGAGGCGCCACCTCCAGCGG
TGAGCAGGACAATGAGGACACTGAGCTCATGGCGATCTACACTACGGAAAACGGCATTGCAGAAAAGAGC
TCTCTCGCTGAGACCCTGGATAGCACTGGCAGTCTGGACCCCCAGCGATCAGACATGATTTATACCATAG
AAGATGTTCCTCCCTGGTACCTGTGTATATTTCTGGGGCTACAGCACTACCTGACATGCTTCAGCGGCAC
GATCGCAGTGCCCTTCCTGTTGGCCGATGCCATGTGTGTGGGGTACGACCAGTGGGCCACCAGCCAGCTC
ATTGGGACCATTTTCTTCTGTGTGGGAATCACTACTTTGCTACAGACAACGTTTGGATGCAGGTTACCCC
TGTTTCAGGCCAGTGCTTTTGCATTTTTGGCCCCTGCTCGAGCCATCCTGTCTTTAGATAAATGGAAATG
TAACACCACAGATGTTTCAGTTGCCAATGGAACAGCAGAGCTGTTGCACACAGAACACATCTGGTATCCC
CGGATCCGAGAGATCCAGGGGGCCATCATCATGTCCTCACTGATAGAAGTAGTCATCGGCCTCCTCGGCC
TGCCTGGGGCTCTACTGAAGTACATCGGTCCCTTGACCATTACACCCACGGTGGCCCTAATTGGCCTCTC
TGGTTTCCAGGCAGCGGGGGAGAGAGCCGGGAAGCACTGGGGCATTGCCATGCTGACAATATTCCTAGTA
TTACTGTTTTCTCAATACGCCAGAAATGTTAAATTTCCTCTCCCGATTTATAAATCCAAGAAAGGATGGA
CTGCGTACAAGTTACAGCTGTTCAAAATGTTCCCTATCATCCTGGCCATCCTGGTATCCTGGCTGCTCTG
CTTCATCTTCACGGTGACAGATGTCTTCCCTCCCGACAGCACAAAGTATGGCTTCTATGCTCGCACAGAT
GCCAGGCAAGGCGTGCTTCTGGTAGCCCCGTGGTTTAAGGTTCCATACCCATTTCAGTGGGGACTGCCCA
CCGTGTCTGCGGCCGGTGTCATCGGCATGCTCAGTGCCGTGGTCGCCAGCATCATCGAGTCTATTGGTGA
CTACTACGCCTGTGCACGGCTGTCCTGTGCCCCACCCCCCCCCATCCACGCAATAAACAGGGGAATTTTC
GTGGAAGGCCTCTCCTGTGTTCTTGATGGCATATTTGGTACTGGGAATGGCTCTACTTCATCCAGTCCCA
ACATTGGAGTTTTGGGAATTACAAAGGTCGGCAGCCGCCGCGTGATACAGTGCGGAGCAGCCCTCATGCT
CGCTCTGGGCATGATCGGGAAGTTCAGCGCCCTCTTTGCGTCCCTTCCGGATCCTGTGCTGGGAGCCCTG
TTCTGCACGCTCTTTGGAATGATCACAGCTGTTGGCCTCTCTAACCTGCAGTTCATTGATTTAAATTCTT
CCCGGAACCTCTTTGTGCTTGGATTTTCGATCTTCTTTGGGCTCGTCCTTCCAAGTTACCTCAGACAGAA
CCCTCTGGTCACAGGGATAACAGGAATCGATCAAGTGTTGAACGTCCTTCTCACAACTGCTATGTTTGTA
GGGGGCTGTGTGGCTTTTATCCTGGATAACACCATCCCAGGCACTCCAGAGGAAAGAGGAATCCGGAAAT
GGAAGAAGGGTGTGGGCAAAGGGAACAAATCACTCGACGGCATGGAGTCGTACAATTTGCCATTTGGCAT
GAACATTATAAAAAAATACAGATGCTTCAGCTACTTACCCATCAGCCCAACCTTTGTGGGCTACACATGG
AAAGGCCTCAGGAAGAGCGACAACAGCCGGAGTTCAGATGAAGACTCCCAGGCCACGGGATAG

Translation (650 aa):
MMGIGKNTTSKSMEAGSSTEGKYEDEAKHPAFFTLPVVINGGATSSGEQDNEDTELMAIYTTENGIAEKS
SLAETLDSTGSLDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMCVGYDQWATSQL
IGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTDVSVANGTAELLHTEHIWYP
RIREIQGAIIMSSLIEVVIGLLGLPGALLKYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLV
LLFSQYARNVKFPLPIYKSKKGWTAYKLQLFKMFPIILAILVSWLLCFIFTVTDVFPPDSTKYGFYARTD
ARQGVLLVAPWFKVPYPFQWGLPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIF
VEGLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQCGAALMLALGMIGKFSALFASLPDPVLGAL
FCTLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQVLNVLLTTAMFV
GGCVAFILDNTIPGTPEERGIRKWKKGVGKGNKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFVGYTW
KGLRKSDNSRSSDEDSQATG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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