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Report for CCDS43763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43763.1 Public Homo sapiens 8 SYBU 24 110 108 CCDS HistoryNCBI Gene:55638Re-query CCDS DB by CCDS ID:43763.1Re-query CCDS DB by GeneID:55638See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43763.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446070.6 ENSP00000414748.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446070.6Link to Ensembl Protein Viewer:ENSP00000414748.2Re-query CCDS DB by Nucleotide ID:ENST00000446070Re-query CCDS DB by Protein ID:ENSP00000414748
Original member Current member EBI ENST00000528647.5 ENSP00000432501.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528647.5Link to Ensembl Protein Viewer:ENSP00000432501.1Re-query CCDS DB by Nucleotide ID:ENST00000528647Re-query CCDS DB by Protein ID:ENSP00000432501
Original member Current member EBI ENST00000533895.5 ENSP00000433446.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533895.5Link to Ensembl Protein Viewer:ENSP00000433446.1Re-query CCDS DB by Nucleotide ID:ENST00000533895Re-query CCDS DB by Protein ID:ENSP00000433446
Original member Current member NCBI NM_001099743.2 NP_001093213.1 Accepted alive Link to Nucleotide Sequence:NM_001099743.2Link to Protein Sequence:NP_001093213.1Re-query CCDS DB by Nucleotide ID:NM_001099743Re-query CCDS DB by Protein ID:NP_001093213Link to BLAST:NP_001093213.1
Original member Current member NCBI NM_001099747.2 NP_001093217.1 Accepted alive Link to Nucleotide Sequence:NM_001099747.2Link to Protein Sequence:NP_001093217.1Re-query CCDS DB by Nucleotide ID:NM_001099747Re-query CCDS DB by Protein ID:NP_001093217Link to BLAST:NP_001093217.1
Original member Current member NCBI NM_001099751.2 NP_001093221.1 Accepted alive Link to Nucleotide Sequence:NM_001099751.2Link to Protein Sequence:NP_001093221.1Re-query CCDS DB by Nucleotide ID:NM_001099751Re-query CCDS DB by Protein ID:NP_001093221Link to BLAST:NP_001093221.1
Original member Current member NCBI NM_001099753.2 NP_001093223.1 Accepted alive Link to Nucleotide Sequence:NM_001099753.2Link to Protein Sequence:NP_001093223.1Re-query CCDS DB by Nucleotide ID:NM_001099753Re-query CCDS DB by Protein ID:NP_001093223Link to BLAST:NP_001093223.1
Original member Current member NCBI NM_017786.6 NP_060256.3 Accepted alive Link to Nucleotide Sequence:NM_017786.6Link to Protein Sequence:NP_060256.3Re-query CCDS DB by Nucleotide ID:NM_017786Re-query CCDS DB by Protein ID:NP_060256Link to BLAST:NP_060256.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093213.1 662 Q9NX95-3 662 100% 0 0
NP_001093217.1 662 Q9NX95-3 662 100% 0 0
NP_001093221.1 662 Q9NX95-3 662 100% 0 0
NP_001093223.1 662 Q9NX95-3 662 100% 0 0
NP_060256.3 662 Q9NX95-3 662 100% 0 0

Chromosomal Locations for CCDS 43763.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109574906 109576013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109577868 109578017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109579799 109580002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109586060 109586162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109618842 109619039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109642728 109642929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109644636 109644659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGGGCCCCTCCGCGAGAGCAAGGAGCACAGAGTGCAGCATCATGACAAGGAGATTTCTCGAAGCCGAA
TTCCCCGGTTGATTCTTCGGCCCCATATGCCCCAACAACAGCACAAAGTGTCCCCAGCCTCTGAGTCTCC
TTTCTCTGAGGAAGAGAGCAGAGAGTTCAACCCCAGCAGCTCTGGGCGCTCAGCGAGGACCGTTAGCAGC
AACAGCTTCTGCTCAGATGACACAGGCTGTCCTAGCAGCCAGTCAGTGTCTCCTGTGAAGACACCCTCAG
ATGCTGGAAACAGCCCCATTGGCTTTTGCCCTGGAAGTGATGAAGGCTTCACCAGAAAGAAATGCACGAT
TGGAATGGTTGGTGAAGGAAGCATTCAGTCCTCTCGATATAAGAAGGAATCAAAGTCAGGCCTTGTGAAA
CCAGGTAGTGAAGCTGATTTTAGCTCCTCGAGCAGCACAGGCAGCATTTCCGCTCCTGAGGTCCATATGT
CGACTGCGGGAAGCAAGCGGTCTTCTTCTTCACGCAATCGAGGTCCTCATGGGCGGAGTAATGGAGCTTC
GTCACACAAGCCTGGCAGCAGCCCATCATCCCCGCGGGAAAAGGACCTTCTGTCCATGCTGTGCAGGAAT
CAGCTGAGCCCTGTCAATATCCATCCCAGTTATGCACCTTCTTCCCCAAGCAGTAGCAACTCAGGCTCCT
ACAAAGGAAGCGACTGTAGCCCCATCATGAGGCGTTCTGGAAGGTACATGTCTTGCGGTGAAAATCATGG
TGTCAGACCCCCAAACCCAGAGCAGTATTTGACTCCACTGCAGCAGAAAGAGGTGACAGTGAGACACCTC
AAAACCAAGCTGAAGGAATCTGAGCGCCGACTCCATGAAAGGGAAAGTGAAATCGTGGAGCTTAAGTCCC
AGCTGGCCCGCATGCGAGAGGACTGGATTGAGGAGGAGTGTCACCGGGTAGAGGCCCAGTTGGCACTCAA
AGAAGCCAGGAAAGAGATTAAACAGCTCAAACAGGTCATCGAAACCATGCGGAGCAGCTTGGCTGATAAA
GATAAAGGCATTCAGAAATATTTTGTGGACATAAACATCCAAAACAAGAAGCTGGAGTCTCTCCTTCAGA
GCATGGAGATGGCACACAGTGGCTCTCTGAGGGACGAACTGTGCCTAGACTTTCCATGTGATTCCCCAGA
GAAGAGCTTAACCCTCAACCCCCCTCTTGACACAATGGCAGATGGGTTATCTCTGGAAGAGCAGGTCACG
GGGGAAGGGGCTGACAGGGAGCTACTGGTAGGAGATAGCATAGCCAACAGCACAGATTTGTTCGATGAGA
TAGTGACAGCCACCACCACAGAATCTGGTGACCTGGAGCTTGTGCATTCCACCCCTGGGGCTAACGTCCT
GGAGCTGCTGCCCATAGTCATGGGTCAGGAGGAGGGCAGTGTGGTGGTGGAGCGAGCCGTTCAGACCGAC
GTGGTGCCCTACAGCCCAGCCATCTCAGAGCTCATTCAGAGTGTGCTGCAGAAGCTCCAGGACCCCTGTC
CCTCGAGCTTGGCGTCCCCTGATGAGTCTGAACCAGACTCGATGGAGAGCTTCCCAGAGTCCCTCTCTGC
CTTAGTGGTTGATTTAACTCCAAGAAATCCAAACTCAGCCATCCTTTTGTCTCCCGTGGAGACCCCCTAC
GCCAATGTGGATGCAGAAGTTCATGCAAACCGCCTCATGAGAGAGCTGGATTTTGCAGCCTGCGTGGAAG
AGAGGTTGGATGGTGTCATCCCACTGGCTCGCGGGGGCGTCGTGAGGCAGTACTGGAGCAGCAGCTTCCT
GGTGGATCTCCTGGCTGTGGCTGCCCCCGTGGTCCCCACGGTTCTGTGGGCATTCAGTACTCAGAGAGGG
GGAACGGATCCTGTGTATAACATCGGGGCCTTGCTCAGGGGCTGTTGCGTGGTTGCCCTGCATTCGCTCC
GCCGCACCGCCTTCCGTATCAAAACCTAA

Translation (662 aa):
MGPLRESKEHRVQHHDKEISRSRIPRLILRPHMPQQQHKVSPASESPFSEEESREFNPSSSGRSARTVSS
NSFCSDDTGCPSSQSVSPVKTPSDAGNSPIGFCPGSDEGFTRKKCTIGMVGEGSIQSSRYKKESKSGLVK
PGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGASSHKPGSSPSSPREKDLLSMLCRN
QLSPVNIHPSYAPSSPSSSNSGSYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL
KTKLKESERRLHERESEIVELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADK
DKGIQKYFVDINIQNKKLESLLQSMEMAHSGSLRDELCLDFPCDSPEKSLTLNPPLDTMADGLSLEEQVT
GEGADRELLVGDSIANSTDLFDEIVTATTTESGDLELVHSTPGANVLELLPIVMGQEEGSVVVERAVQTD
VVPYSPAISELIQSVLQKLQDPCPSSLASPDESEPDSMESFPESLSALVVDLTPRNPNSAILLSPVETPY
ANVDAEVHANRLMRELDFAACVEERLDGVIPLARGGVVRQYWSSSFLVDLLAVAAPVVPTVLWAFSTQRG
GTDPVYNIGALLRGCCVVALHSLRRTAFRIKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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